DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta3 and lgc-11

DIOPT Version :9

Sequence 1:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_509270.1 Gene:lgc-11 / 181009 WormBaseID:WBGene00000061 Length:434 Species:Caenorhabditis elegans


Alignment Length:449 Identity:92/449 - (20%)
Similarity:175/449 - (38%) Gaps:99/449 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 KNANVKALD-----RLHAGLFTNYDSDVQPVFQ-GTPTNVSLE-MVVTYIDIDELNGKLTTHCWL 101
            ||..|:..|     .|...|..:|....:||.. .:..||::: .:...::::|.|.::....|.
 Worm    24 KNKAVEKKDDRNERELAKHLLDDYYQYTRPVRNYSSVLNVTVQPQIYNLVEVNEQNEQIKILLWF 88

  Fly   102 NLRWRDEERVWQPSQYDNITQITLKSSEVWTPQITLFNGDEGGLMAETQVTLSHDGHFRWMPPA- 165
            ...|:|:...|.|.:::.|.:|.:..|::|.|...:||..|     ||:...:|:...|:.... 
 Worm    89 PQSWKDDYLTWDPKEWNGIERIIIPKSQIWIPDGYIFNTVE-----ETEPLENHNARVRYDGRVE 148

  Fly   166 -----VYTAYCELNMLNWPHDKQSCKLKIGSWG----------LKVVLPENGTARGESLDHDDLV 215
                 :....|.:::|::|.|.|.|.|:.|||.          |...:|:..             
 Worm   149 VDFNKLVDLTCPMSVLSFPFDVQLCALQFGSWSYQAHAISFNVLDTFVPKKS------------- 200

  Fly   216 QSPEWEIVDSRAHFVSQDY---------YGYMEYTLTAQRRSSMYTAVIYTPASCIVILALSAFW 271
            ::.||:||...|..::..|         |..:.|.|..:|:...|..||..|:..||.::....:
 Worm   201 KNSEWDIVSFNATKMTTKYGDTLGGFNVYEEIFYYLELRRKPLYYIVVILLPSFLIVTVSNIGLF 265

  Fly   272 LPPHMGG---EKIMINGLLIIVIAAFLMYFAQLLPVLSNNTPLVVIFYSTSLLYLSVSTIVEVLV 333
            .|..:.|   |.:.:....::.:|..|......:|..|...||:.::.....:...::.:|.|::
 Worm   266 TPHGVHGDREEHVSLGLTTMLTMAVILDMVTGQMPRSSEGIPLLGMYVLIEFVISVIAVLVSVVI 330

  Fly   334 LYLATGKHKRRLPEALRKLLHGHLGTWLLLSVFSTTGESQAEKTKE----------------MDE 382
            ::    .|:|.|      .|......| :..:||...:...|:.:|                |:|
 Worm   331 IF----AHERML------YLDATPPYW-VCKLFSDDCKMSLEEIEEDFCSKPADLVQELRFCMEE 384

  Fly   383 HPYEEADEQESSPLGINHTEVPGAKANQFDWALLATAVDRISFVSFSLAFLILAIRCSV 441
            .. ...|||:|:            :.|:..|....:..|    :.||:.|.:  :.|.|
 Worm   385 IK-RYLDEQDST------------EKNRIIWQRFFSWTD----IIFSIFFFV--VNCLV 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 90/443 (20%)
Neur_chan_LBD 52..247 CDD:280998 48/226 (21%)
Neur_chan_memb 255..434 CDD:280999 36/197 (18%)
lgc-11NP_509270.1 Neur_chan_LBD 36..242 CDD:280998 48/223 (22%)
Neur_chan_memb 249..>336 CDD:280999 16/90 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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