DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta3 and acr-2

DIOPT Version :9

Sequence 1:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_509128.1 Gene:acr-2 / 180936 WormBaseID:WBGene00000042 Length:575 Species:Caenorhabditis elegans


Alignment Length:354 Identity:96/354 - (27%)
Similarity:171/354 - (48%) Gaps:53/354 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 TSVPGATATADP-KNANV-----KALDRLHAGLFTNYDSDVQPVFQGTPTNVSLEMVVT------ 84
            |::.....::|| ||::.     :..|||...||..|:..::||     .|||...||.      
 Worm    35 TNIDDPNNSSDPNKNSDQGDTMGEDEDRLVIDLFREYNFLIRPV-----KNVSSPPVVVDFGVAM 94

  Fly    85 --YIDIDELNGKLTTHCWLNLRWRDEERVWQPSQYDNITQITLKSSEVWTPQITLFNGDEGG--L 145
              .|::||.|..|.|:.||.::|.|.:..|.|::|.||:.:.:.|..||.|.|.|||..:|.  :
 Worm    95 ILLINVDEKNQILQTNVWLTMKWNDFQLAWNPAEYGNISNLHVPSDRVWLPDIVLFNNADGNYEV 159

  Fly   146 MAETQVTLSHDGHFRWMPPAVYTAYCELNMLNWPHDKQSCKLKIGSWGLKVVLPENGTARGE--- 207
            ..::.|.:.|.|...|:|||::.:.|.:::..:|.|:|.|.|..|||          |...|   
 Worm   160 SFKSNVFVDHHGDVTWVPPAMFKSSCRIDVEWFPFDEQCCTLVFGSW----------TYNSEEVR 214

  Fly   208 --------SLDHDDLVQSPEWEIVDSRAHFVSQD--YYGYMEYTLTAQRRSSMYTAVIYTPASCI 262
                    ::...|...|..|:::|.....|.:.  ....|.:.:..:|::..||.::..|...:
 Worm   215 LHWYNNIQAVQLHDYSYSGIWDVIDVPGQLVHKPDLKENKMVFNVVIRRKTLFYTVILIIPTVLM 279

  Fly   263 VILALSAFWLPPHMGGEKIMINGLLIIVIAAFLMYFAQLLPVLSNNTPL----VVIFYSTSLLYL 323
            ..|::.||:||.. .|||:.:...|::.:..||:..:::||..| |.||    :::.:..::..:
 Worm   280 AFLSVMAFYLPVD-SGEKVSLTISLLLALVVFLLLVSKILPPTS-NIPLMGKYLLLAFVLNITAV 342

  Fly   324 SVSTIVEVLVLYLATGKHKRRLPEALRKL 352
             |.|:|.|.:.:.:...||  :|..:||:
 Worm   343 -VGTVVIVNIYFRSALSHK--MPTWVRKV 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 95/347 (27%)
Neur_chan_LBD 52..247 CDD:280998 61/217 (28%)
Neur_chan_memb 255..434 CDD:280999 27/102 (26%)
acr-2NP_509128.1 LIC 54..544 CDD:273305 91/335 (27%)
Neur_chan_LBD 60..265 CDD:280998 62/219 (28%)
Neur_chan_memb 272..544 CDD:280999 27/102 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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