Sequence 1: | NP_525098.1 | Gene: | nAChRbeta3 / 33228 | FlyBaseID: | FBgn0031261 | Length: | 441 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001380111.1 | Gene: | des-2 / 179574 | WormBaseID: | WBGene00000955 | Length: | 559 | Species: | Caenorhabditis elegans |
Alignment Length: | 553 | Identity: | 116/553 - (20%) |
---|---|---|---|
Similarity: | 199/553 - (35%) | Gaps: | 158/553 - (28%) |
- Green bases have known domain annotations that are detailed below.
Fly 26 MLLMGLTSVPGATATADPKNANVKALDRLHAGLFTNYDSDVQPVFQGT-PTNVSLEM-VVTYIDI 88
Fly 89 DELNGKLTTHCWLNLRWRDEERVWQPSQYDNITQITLKSSEVWTPQITLFNG-----DEGGLMAE 148
Fly 149 TQVTLSHDGHFR-----WMPPAVYTAYCELNMLNWPHDKQSCKLKIGSWGLKVVLPENGTARGES 208
Fly 209 LDH---------DDLVQSPEWEIVDSRAHFVSQDY------YGYMEYTLTAQRRSSMYTAVIYTP 258
Fly 259 ASCIVILALSAFWLPPHMGG---EKIMINGLLIIVIAAFLMYFAQLLPVLSNNTPLVVIFYSTSL 320
Fly 321 LYLSVSTI--------------------------------------------------------V 329
Fly 330 EVLVLYLATGKHKRR---LPEALRKLLHGHLGTWLLLSVFSTTGESQAEKT-KEMDEHPYEEADE 390
Fly 391 -QESSPL--------------------------------------------GINHTEV--PGAKA 408
Fly 409 N------QFDWALLATAVDRISFVSFSLAFLIL 435 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta3 | NP_525098.1 | LIC | 39..437 | CDD:273305 | 113/540 (21%) |
Neur_chan_LBD | 52..247 | CDD:280998 | 53/221 (24%) | ||
Neur_chan_memb | 255..434 | CDD:280999 | 54/294 (18%) | ||
des-2 | NP_001380111.1 | Neur_chan_LBD | 28..222 | CDD:397192 | 50/205 (24%) |
LGIC_TM_cation | 239..>332 | CDD:349853 | 16/92 (17%) | ||
TM1 helix | 243..263 | CDD:349853 | 5/19 (26%) | ||
TM2 helix | 275..296 | CDD:349853 | 0/20 (0%) | ||
TM3 helix | 307..329 | CDD:349853 | 3/21 (14%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR18945 |
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 1.100 |