DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta3 and Chrne

DIOPT Version :9

Sequence 1:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster
Sequence 2:XP_006532069.1 Gene:Chrne / 11448 MGIID:87894 Length:494 Species:Mus musculus


Alignment Length:507 Identity:115/507 - (22%)
Similarity:194/507 - (38%) Gaps:131/507 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 LMGMLLMGLTSVPGATATADPKNANVKALDRLHAGLFTNYDSDVQPVFQGTPTNVSLEMVVTYID 87
            |:|.||: ||    ....:..||..:.    |:..||.|||.:.:||.:...| |::.:.||..:
Mouse     5 LLGALLL-LT----LFGRSQGKNEELS----LYHHLFDNYDPECRPVRRPEDT-VTITLKVTLTN 59

  Fly    88 IDELNGK---LTTHCWLNLRWRDEERVWQPSQYDNITQITLKSSEVWTPQITLFNGDEG--GLMA 147
            :..||.|   |||..|:.:.|.|....:....:..:..:.:.|..||.|:|.|.|..:|  |:..
Mouse    60 LISLNEKEETLTTSVWIGIDWHDYRLNYSKDDFAGVGILRVPSEHVWLPEIVLENNIDGQFGVAY 124

  Fly   148 ETQVTLSHDGHFRWMPPAVYTAYCELNMLNWPHDKQSCKLKIGSWG--------LKVVLPENGTA 204
            ::.|.:...|:..|:|||:|.:.|.:.:..:|.|.|:|.|...|..        :..|..:..|.
Mouse   125 DSNVLVYEGGYVSWLPPAIYRSTCAVEVTYFPFDWQNCSLIFRSQTYNAEEVEFIFAVDDDGNTI 189

  Fly   205 RGESLDHDDLVQSPEWEIVDSRAHFVSQDYYGYME--------YTLTAQRRSSMYTAVIYTPASC 261
            ....:|.....::.||.| |.....:.:...|..|        |||..:|:...|...|..|  |
Mouse   190 NKIDIDTAAFTENGEWAI-DYCPGMIRRYEGGSTEGPGETDVIYTLIIRRKPLFYVINIIVP--C 251

  Fly   262 IVI--LALSAFWLPPHMGGEKIMINGLLIIVIAAFLMYFAQLLPVLSNNTP-----LVVIFYSTS 319
            ::|  |.|.|::||...||:|..::..:::....||...||.:|..|.:.|     |:.:....:
Mouse   252 VLISGLVLLAYFLPAQAGGQKCTVSINVLLAQTVFLFLIAQKIPETSLSVPLLGRYLIFVMVVAT 316

  Fly   320 LLYLSVSTIVEVLVLYLATGKHKRRLPEALRKLL------------------------------- 353
            |:.::...::.|.:....|.....||.:.|.:||                               
Mouse   317 LIVMNCVIVLNVSLRTPTTHATSPRLRQILLELLPRLLGSSPPPEDPRTASPARRASSVGILLRA 381

  Fly   354 ------------------HGHLGTWLLLSVFSTTGESQ-------------AEKTKEMDEHPYEE 387
                              |.| |||...::....|.:.             ||.|::      :|
Mouse   382 EELILKKPRSELVFEGQRHRH-GTWTAAALCQNLGAAAPEIRCCVDAVNFVAESTRD------QE 439

  Fly   388 ADEQESSPLGINHTEVPGAKANQFDWALLATAVDRISF----VSFSLAFLIL 435
            |..:|.|                 ||..:..|:|.:.|    |.||:...::
Mouse   440 ATGEELS-----------------DWVRMGKALDNVCFWAALVLFSVGSTLI 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 109/491 (22%)
Neur_chan_LBD 52..247 CDD:280998 56/215 (26%)
Neur_chan_memb 255..434 CDD:280999 49/251 (20%)
ChrneXP_006532069.1 LGIC_ECD_nAChR_E 49..239 CDD:349831 47/190 (25%)
Neur_chan_memb 247..474 CDD:367256 49/252 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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