DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta3 and Chrnd

DIOPT Version :9

Sequence 1:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_067611.2 Gene:Chrnd / 11447 MGIID:87893 Length:520 Species:Mus musculus


Alignment Length:465 Identity:116/465 - (24%)
Similarity:198/465 - (42%) Gaps:66/465 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 VSGPGLPL-LLQMLMGMLLMGLTSVPGATATADPKNANVKALDRLHAGLFT--NYDSDVQPVF-Q 71
            ::||.|.| ||..|:      :.::||:....:.:        ||...||.  .||.|::||. :
Mouse     1 MAGPVLTLGLLAALV------VCALPGSWGLNEEQ--------RLIQHLFNEKGYDKDLRPVARK 51

  Fly    72 GTPTNVSLEMVVT-YIDIDELNGKLTTHCWLNLRWRDEERVWQPSQYDNITQITLKSSEVWTPQI 135
            ....:|:|.:.:: .|.:.|:...|||:.|::..|.|....|..:.:.|||.:.|....||.|:|
Mouse    52 EDKVDVALSLTLSNLISLKEVEETLTTNVWIDHAWVDSRLQWDANDFGNITVLRLPPDMVWLPEI 116

  Fly   136 TLFNGDEGGLMAE--TQVTLSHDGHFRWMPPAVYTAYCELNMLNWPHDKQSCKLKIGSWGLKVVL 198
            .|.|.::|.....  ..|.:...|:..|:|||::.:.|.:::..:|.|.|:|.||..|  ||...
Mouse   117 VLENNNDGSFQISYACNVLVYDSGYVTWLPPAIFRSSCPISVTYFPFDWQNCSLKFSS--LKYTA 179

  Fly   199 PENGTARGES-------------LDHDDLVQSPEWEIVDSRAHF-----VSQDYYGYMEYT--LT 243
            .|...:..:.             :|.:...::.|||||...|..     |..|...:.:.|  |.
Mouse   180 KEITLSLKQEEENNRSYPIEWIIIDPEGFTENGEWEIVHRAAKLNVDPSVPMDSTNHQDVTFYLI 244

  Fly   244 AQRRSSMYTAVIYTPASCIVILALSAFWLPPHMGGEKIMINGLLIIVIAAFLMYFAQLLPVLSNN 308
            .:|:...|...|..|...|..:....|:||... |||..:...:::..:.||:..::.||..|..
Mouse   245 IRRKPLFYIINILVPCVLISFMINLVFYLPGDC-GEKTSVAISVLLAQSVFLLLISKRLPATSMA 308

  Fly   309 TPLVVIFYSTSLLYLSVSTIVEVLVL---YLATGKH------KRRLPEALRKLLH------GHLG 358
            .|||..|....::.:::..::.|:||   :.....|      |:...|.|.||||      ...|
Mouse   309 IPLVGKFLLFGMVLVTMVVVICVIVLNIHFRTPSTHVLSEGVKKFFLETLPKLLHMSRPAEEDPG 373

  Fly   359 TWLLLSVFSTTGE-SQAEK---TKEMDEHPYEEADEQESSPLGINHTEVPGAKANQFDWAL---L 416
            ...|:...|:.|. .:||:   .|...:..:|:..|:......:.....|.|.:.|....|   :
Mouse   374 PRALIRRSSSLGYICKAEEYFSLKSRSDLMFEKQSERHGLARRLTTARRPPASSEQVQQELFNEM 438

  Fly   417 ATAVDRISFV 426
            ..|||..:|:
Mouse   439 KPAVDGANFI 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 107/436 (25%)
Neur_chan_LBD 52..247 CDD:280998 59/220 (27%)
Neur_chan_memb 255..434 CDD:280999 46/194 (24%)
ChrndNP_067611.2 LIC 1..479 CDD:273305 116/465 (25%)
Neur_chan_LBD 28..249 CDD:280998 60/230 (26%)
Neur_chan_memb 256..492 CDD:280999 46/194 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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