DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta3 and Chrnb2

DIOPT Version :9

Sequence 1:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_033732.2 Gene:Chrnb2 / 11444 MGIID:87891 Length:501 Species:Mus musculus


Alignment Length:463 Identity:104/463 - (22%)
Similarity:189/463 - (40%) Gaps:117/463 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 TNYDSDVQPVFQGTPTNVSLEMVVT---YIDIDELNGKLTTHCWLNLRWRDEERVWQPSQYDNIT 121
            :.|:..::|...|:.. |:::::|:   .|.:.|....:||:.||...|.|....|:|..:||:.
Mouse    40 SRYNKLIRPATNGSEL-VTVQLMVSLAQLISVHEREQIMTTNVWLTQEWEDYRLTWKPEDFDNMK 103

  Fly   122 QITLKSSEVWTPQITLFNGDEGGLMAE----TQVTLSHDGHFRWMPPAVYTAYCELNMLNWPHDK 182
            ::.|.|..:|.|.:.|:|..:|  |.|    :...:|:||...|:|||:|.:.|::.:.::|.|:
Mouse   104 KVRLPSKHIWLPDVVLYNNADG--MYEVSFYSNAVVSYDGSIFWLPPAIYKSACKIEVKHFPFDQ 166

  Fly   183 QSCKLKIGSW-----GLKVVLPENGTARGESLDHDDLVQSPEWEIV---DSRAHFVSQDYYGYME 239
            |:|.:|..||     .:.:||      :.:....||...|.||:|:   ..|........|..:.
Mouse   167 QNCTMKFRSWTYDRTEIDLVL------KSDVASLDDFTPSGEWDIIALPGRRNENPDDSTYVDIT 225

  Fly   240 YTLTAQRRSSMYTAVIYTPASCIVILALSAFWLPPHMGGEKIMINGLLIIVIAAFLMYFAQLLPV 304
            |....:|:...||..:..|...|..||:..|:||... |||:.:...:::.:..||:..::::|.
Mouse   226 YDFIIRRKPLFYTINLIIPCVLITSLAILVFYLPSDC-GEKMTLCISVLLALTVFLLLISKIVPP 289

  Fly   305 LSNNTPLV--VIFYSTSLLYLSVSTIVEVL--------------------------VLYLATGKH 341
            .|.:.|||  .:.::..|:..|:.|.|.||                          :|:|...:|
Mouse   290 TSLDVPLVGKYLMFTMVLVTFSIVTSVCVLNVHHRSPTTHTMAPWVKVVFLEKLPTLLFLQQPRH 354

  Fly   342 ---KRRLPEALRKLLHGHLGTWLLL-----------------SVFSTTGESQAEK---------- 376
               ::||  .||:......|...|.                 |:....|..|||.          
Mouse   355 RCARQRL--RLRRRQREREGAGTLFFREGPAADPCTCFVNPASMQGLAGAFQAEPAAAGLGRSMG 417

  Fly   377 ------------TKEMDEHPYEEADEQESSPLGINHTEVPGAKANQFDWALLATAVDRISFVSFS 429
                        .:.:.:|...|.|:|                :.:.||..:|..:||:    |.
Mouse   418 PCSCGLREAVDGVRFIADHMRSEDDDQ----------------SVREDWKYVAMVIDRL----FL 462

  Fly   430 LAFLILAI 437
            ..|:.:.:
Mouse   463 WIFVFVCV 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 104/461 (23%)
Neur_chan_LBD 52..247 CDD:280998 53/201 (26%)
Neur_chan_memb 255..434 CDD:280999 48/248 (19%)
Chrnb2NP_033732.2 LIC 29..478 CDD:273305 104/463 (22%)
Neur_chan_LBD 29..234 CDD:280998 54/202 (27%)
Neur_chan_memb 241..477 CDD:280999 48/253 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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