DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta3 and Chrna4

DIOPT Version :9

Sequence 1:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_056545.3 Gene:Chrna4 / 11438 MGIID:87888 Length:629 Species:Mus musculus


Alignment Length:366 Identity:102/366 - (27%)
Similarity:180/366 - (49%) Gaps:43/366 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 VSGPGLPLLLQMLMGMLLMGLTSVPGATATADPKNANVKALDRLHAGLFTNYDSDVQPVFQGTPT 75
            :.|.|.|..|.:|..:||:|...:|.::......:|..:.|.|    ||:.|:...:||     .
Mouse     3 IGGSGAPPPLLLLPLLLLLGTGLLPASSHIETRAHAEERLLKR----LFSGYNKWSRPV-----A 58

  Fly    76 NVSLEMVVTY-------IDIDELNGKLTTHCWLNLRWRDEERVWQPSQYDNITQITLKSSEVWTP 133
            |:|..::|.:       ||:||.|..:||:.|:...|.|.:..|.|..|:|:|.|.:.|..:|.|
Mouse    59 NISDVVLVRFGLSIAQLIDVDEKNQMMTTNVWVKQEWHDYKLRWDPGDYENVTSIRIPSELIWRP 123

  Fly   134 QITLFNGDEGGLMAETQVTLSH---DGHFRWMPPAVYTAYCELNMLNWPHDKQSCKLKIGSW--- 192
            .|.|:|..:|. .|.|.:|.:|   ||..:|.|||:|.:.|.:::..:|.|:|:|.:|.|||   
Mouse   124 DIVLYNNADGD-FAVTHLTKAHLFYDGRVQWTPPAIYKSSCSIDVTFFPFDQQNCTMKFGSWTYD 187

  Fly   193 GLKVVLPENGTARGESLDHDDLVQSPEWEIVDSRAHFVSQDY------YGYMEYTLTAQRRSSMY 251
            ..|:.|    .:....:|..|..:|.||.|||:...:.::.|      |..:.|....:|....|
Mouse   188 KAKIDL----VSMHSRVDQLDFWESGEWVIVDAVGTYNTRKYECCAEIYPDITYAFIIRRLPLFY 248

  Fly   252 TAVIYTPASCIVILALSAFWLPPHMGGEKIMINGLLIIVIAAFLMYFAQLLPVLSNNTPLVVIFY 316
            |..:..|...|..|.:..|:||... |||:.:...:::.:..||:...:::|..|...||:..:.
Mouse   249 TINLIIPCLLISCLTVLVFYLPSEC-GEKVTLCISVLLSLTVFLLLITEIIPSTSLVIPLIGEYL 312

  Fly   317 STSLLYLSVSTIVEVLVLYLATGKHKR-----RLPEALRKL 352
            ..:::::::|.::.|.||.:    |.|     .:|..:|::
Mouse   313 LFTMIFVTLSIVITVFVLNV----HHRSPRTHTMPAWVRRV 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 93/338 (28%)
Neur_chan_LBD 52..247 CDD:280998 65/213 (31%)
Neur_chan_memb 255..434 CDD:280999 23/103 (22%)
Chrna4NP_056545.3 Neur_chan_LBD 39..245 CDD:280998 67/219 (31%)
Neur_chan_memb 252..620 CDD:280999 23/103 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 420..459
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 503..529
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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