DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta3 and Chrna1

DIOPT Version :9

Sequence 1:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_031415.2 Gene:Chrna1 / 11435 MGIID:87885 Length:457 Species:Mus musculus


Alignment Length:463 Identity:120/463 - (25%)
Similarity:217/463 - (46%) Gaps:75/463 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 MLLMGLTSVPGATATADPKNANVKALDRLHAGLFTNYDSDVQPV---FQGTPTNVSLEMVVTYID 87
            :||:||.|. |....::.:.       ||.|.||.:|.|.|:||   .:.....|.|:: :..|:
Mouse     7 LLLLGLCSA-GLVLGSEHET-------RLVAKLFEDYSSVVRPVEDHREIVQVTVGLQL-IQLIN 62

  Fly    88 IDELNGKLTTHCWLNLRWRDEERVWQPSQYDNITQITLKSSEVWTPQITLFNGDEG--GLMAETQ 150
            :||:|..:||:..|..:|.|....|.|..|..:.:|.:.|.::|.|.:.|:|..:|  .::..|:
Mouse    63 VDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHIPSEKIWRPDVVLYNNADGDFAIVKFTK 127

  Fly   151 VTLSHDGHFRWMPPAVYTAYCELNMLNWPHDKQSCKLKIGSW----GLKVVLPENGTARGESLDH 211
            |.|.:.||..|.|||::.:|||:.:.::|.|:|:|.:|:|:|    .:..:.||:     :..|.
Mouse   128 VLLDYTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTWTYDGSVVAINPES-----DQPDL 187

  Fly   212 DDLVQSPEWEIVDSRA--HFVSQDYYG------YME--YTLTAQRRSSMYTAVIYTPASCIVILA 266
            .:.::|.||.|.::|.  |:|   :|.      |::  |....||....:...:..|......|.
Mouse   188 SNFMESGEWVIKEARGWKHWV---FYSCCPTTPYLDITYHFVMQRLPLYFIVNVIIPCLLFSFLT 249

  Fly   267 LSAFWLPPHMGGEKIMINGLLIIVIAAFLMYFAQLLPVLSNNTPLVVIFYSTSLLYLSVSTIVEV 331
            ...|:||.. .|||:.::..:::.:..||:...:|:|..|:..||:..:...:::::..|.|:.|
Mouse   250 SLVFYLPTD-SGEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMVFVIASIIITV 313

  Fly   332 LVLYLATGKHKRR-----LPEALRKLLHGHLGTWLLLSVFSTTGESQAEK---TKEMDEHPYEEA 388
            :|:    ..|.|.     :||.:||:....:...:..|........:.||   |:::|..  :.:
Mouse   314 IVI----NTHHRSPSTHIMPEWVRKVFIDTIPNIMFFSTMKRPSRDKQEKRIFTEDIDIS--DIS 372

  Fly   389 DEQESSPLG-----INHTEVPGA-----------KANQ------FDWALLATAVDRISFVSFSLA 431
            .:....|:|     |.|.||..|           |::|      .:|..:|..:|.|....|.|.
Mouse   373 GKPGPPPMGFHSPLIKHPEVKSAIEGVKYIAETMKSDQESNNAAEEWKYVAMVMDHILLGVFMLV 437

  Fly   432 FLI--LAI 437
            .||  ||:
Mouse   438 CLIGTLAV 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 113/448 (25%)
Neur_chan_LBD 52..247 CDD:280998 64/213 (30%)
Neur_chan_memb 255..434 CDD:280999 45/208 (22%)
Chrna1NP_031415.2 Neur_chan_LBD 24..231 CDD:308532 65/222 (29%)
Neur_chan_memb 238..446 CDD:308533 49/215 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48230
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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