DRSC/TRiP Functional Genomics Resources

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Protein Alignment lwr and RAD6

DIOPT Version :9

Sequence 1:NP_001259833.1 Gene:lwr / 33226 FlyBaseID:FBgn0010602 Length:159 Species:Drosophila melanogaster
Sequence 2:NP_011457.1 Gene:RAD6 / 852822 SGDID:S000003026 Length:172 Species:Saccharomyces cerevisiae


Alignment Length:149 Identity:59/149 - (39%)
Similarity:83/149 - (55%) Gaps:7/149 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSGIAITRLGEERKAWRKDHPFGFVARPAKNPDGTLNLMIWECAIPGKKSTPWEGGLYKLRMIFK 65
            ||..|..||..:.|..::|.|.|..|.|.  ||   |:|:|...|.|...||:|.|.::|.:.|.
Yeast     1 MSTPARRRLMRDFKRMKEDAPPGVSASPL--PD---NVMVWNAMIIGPADTPYEDGTFRLLLEFD 60

  Fly    66 DDYPTSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLLNEPNIKDPAQ 130
            ::||..||..||...:||||||.:|.:||.:|  :..|.|...:..||..||.|.|:||...||.
Yeast    61 EEYPNKPPHVKFLSEMFHPNVYANGEICLDIL--QNRWTPTYDVASILTSIQSLFNDPNPASPAN 123

  Fly   131 AEAYTIYCQNRLEYEKRVR 149
            .||.|::..::.:|.|||:
Yeast   124 VEAATLFKDHKSQYVKRVK 142

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lwrNP_001259833.1 UQ_con 8..152 CDD:395127 56/142 (39%)
RAD6NP_011457.1 COG5078 1..150 CDD:227410 59/149 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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