DRSC/TRiP Functional Genomics Resources

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Protein Alignment lwr and ube2d3

DIOPT Version :9

Sequence 1:NP_001259833.1 Gene:lwr / 33226 FlyBaseID:FBgn0010602 Length:159 Species:Drosophila melanogaster
Sequence 2:XP_005156599.1 Gene:ube2d3 / 321832 ZFINID:ZDB-GENE-030131-551 Length:148 Species:Danio rerio


Alignment Length:146 Identity:48/146 - (32%)
Similarity:79/146 - (54%) Gaps:7/146 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 IAITRLGEERKAWRKDHPFGFVARPAKNPDGTLNLMIWECAIPGKKSTPWEGGLYKLRMIFKDDY 68
            :|:.|:.:|.....:|.|    |:.:..|.|. ::..|:..|.|...:|::||::.|.:.|..||
Zfish     1 MALKRIQKELTDLARDPP----AQCSAGPVGD-DVFHWQATIMGPNESPYQGGVFFLTIHFPTDY 60

  Fly    69 PTSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLLNEPNIKDPAQAEA 133
            |..|||..|...::|||:..:|::||.:|  ...|.||:||.::||.|..||.:||..||...|.
Zfish    61 PFKPPKVAFTTRIYHPNINSNGSICLDIL--RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123

  Fly   134 YTIYCQNRLEYEKRVR 149
            ..||..:..:|.:..:
Zfish   124 ARIYKTDTEKYNRMAK 139

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lwrNP_001259833.1 UQ_con 8..152 CDD:395127 47/142 (33%)
ube2d3XP_005156599.1 UBCc 1..146 CDD:412187 48/146 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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