DRSC/TRiP Functional Genomics Resources

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Protein Alignment lwr and Ube2d1

DIOPT Version :9

Sequence 1:NP_001259833.1 Gene:lwr / 33226 FlyBaseID:FBgn0010602 Length:159 Species:Drosophila melanogaster
Sequence 2:XP_006513541.1 Gene:Ube2d1 / 216080 MGIID:2384911 Length:160 Species:Mus musculus


Alignment Length:166 Identity:51/166 - (30%)
Similarity:82/166 - (49%) Gaps:20/166 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 GIAITRLGEERKAW-----------RKDHPFGFVARPAKNPDGTLNLMIWECAIPGKKSTPWEGG 56
            ||..:|:.....:|           ::|.|    |..:..|.|. :|..|:..|.|...:.::||
Mouse     2 GIMKSRVHHLSWSWGEWIQKELSDLQRDPP----AHCSAGPVGD-DLFHWQATIMGPPDSAYQGG 61

  Fly    57 LYKLRMIFKDDYPTSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLLN 121
            ::.|.:.|..|||..|||..|...::|||:..:|::||.:|  ...|.||:|:.::||.|..||.
Mouse    62 VFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDIL--RSQWSPALTVSKVLLSICSLLC 124

  Fly   122 EPNIKDPAQAEAYTIYCQNRLEYEKRVR--AQARAM 155
            :||..||...:...||..::.:|.:..|  .|..||
Mouse   125 DPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 160

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lwrNP_001259833.1 UQ_con 8..152 CDD:395127 46/156 (29%)
Ube2d1XP_006513541.1 UBCc 19..159 CDD:381827 45/146 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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