DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ush and zfpm2a

DIOPT Version :9

Sequence 1:NP_001259829.1 Gene:ush / 33225 FlyBaseID:FBgn0003963 Length:1212 Species:Drosophila melanogaster
Sequence 2:XP_009290873.1 Gene:zfpm2a / 568996 ZFINID:ZDB-GENE-060130-4 Length:1142 Species:Danio rerio


Alignment Length:1415 Identity:270/1415 - (19%)
Similarity:408/1415 - (28%) Gaps:609/1415 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 MEDQLEDQLNDSRD-------PQNNNNNIDDDAD----EDAEF---EEPEKANPQQDQDLGETEM 90
            :|::.|:.::|:.:       ....|...|.:.|    ||.|:   :..|..|    :::|||||
Zfish    20 LEEEEEECISDANELAAKEEFSAEENFPADFEPDNLTCEDMEYFCGKGEENGN----REMGETEM 80

  Fly    91 E-------------------QEHDLQQED------LQQELP---------------ANSPSTPPR 115
            |                   :|.||..:|      .:|:||               .::..|.|.
Zfish    81 ETDSEKTRHPPLEPEEWDGPRELDLFNKDGERRIHSRQQLPVGTTWGPFEGKIELNTDAQKTKPH 145

  Fly   116 SP----SSPQLIPKLEQPATPPSEPEASPCPSPSP-----CPTPKYP-------------KVRLN 158
            .|    :.|:.:..:....|   :...:.|...|.     |.|.|..             ..||.
Zfish   146 VPLVLNAGPRWLLDVTWQGT---DDNKNNCVVYSKGGQLWCTTTKNMMEGEELVAFAVDFDSRLQ 207

  Fly   159 ALLASD------PALKPDAKELTLPDSRLLA---PPPLVKPDTQAQPEVAEPLLKPARFMCLPCG 214
            |:....      ||...|..:| ||....:|   |..:|..|.               |.|..||
Zfish   208 AVNHMSLGEGMYPARLLDTIQL-LPQQAAMASILPTAIVNKDI---------------FPCKACG 256

  Fly   215 IAFSSPSTLEAHQAYYCSHRIKDTDEAGSDKSGAGGSGATAGDAAGLTGGSTEPPA--------- 270
            |.:.|...|:||..||||.|.::.|....:.........:...........:.|.|         
Zfish   257 IWYRSERNLQAHLMYYCSGRQREPDNVPEETDAISHQTPSICPFPQCNKSFSNPRALEMHLSSHS 321

  Fly   271 --KMART---GKQYGCTQCSYSADKKVSLNRHMRMHQTSPAAPTLAGLPSLLQNGIAPPGVTPNP 330
              ||..|   |....||.|:::||..::...|:..|                             
Zfish   322 SVKMEETLPPGTSLKCTICNFTADSLLTFQHHILSH----------------------------- 357

  Fly   331 MEDSSSQQTDRYCSHCDIRFNNIKTYRAHKQHYCSSRRPEGQLTPKPDA--SPGAGSGPGSAGGS 393
                .||...| |:||.|.|.|.:....|:..:..|    |::..:.|:  ||..|.....|   
Zfish   358 ----LSQAAFR-CNHCHISFQNHRELLQHQDLHGHS----GKIHRESDSENSPRGGEDSLQA--- 410

  Fly   394 IGVSAQAATPGK--LSPQARNKTPTPAMVAVAAAAAAAAASLQATPHSHPPFLALPTHPIIIVPC 456
                |:|...|:  :..|:...||..|                                      
Zfish   411 ----ARAELSGRKDIVMQSPKNTPNKA-------------------------------------- 433

  Fly   457 SLIRAASFIPGPLPTPNSGIVNPETTCFTVDNGTIKPLATALVGATLEPER-PSAPSSAA--EAT 518
                         .:|:..:..||.          ||        ||..:: .|.|.|.|  ..|
Zfish   434 -------------NSPDGELERPEK----------KP--------TLGLQKGDSHPGSKASFSYT 467

  Fly   519 EAKSSPPEPKRKEAGLTRESAPLDLSLRRSPITLNSLSLRQRQLRNALLDVEEVLLAGVGTGKEN 583
            ..||.|..|:                |..||:..|                              
Zfish   468 RIKSEPSSPR----------------LASSPVQHN------------------------------ 486

  Fly   584 VETPRGGGSVTPEQIVCAPSLPSSPSMSPSPKRRAISPRSSGAGSASSMSPPGLNVAVPHLLDMR 648
                            ..|:.|..|.:|.....:.||                   .||.     
Zfish   487 ----------------MGPTFPMGPFLSQFAFSQDIS-------------------VVPQ----- 511

  Fly   649 SMLPADFGLSESLLAKTNPELALKLAAAAAAAAVAGSSGAAAFPPASLPAQTSSGNPGSGGSAGG 713
                     :..:|||.:..:..:|           ..|..::||.                   
Zfish   512 ---------ASEILAKMSELVHRRL-----------RHGGNSYPPV------------------- 537

  Fly   714 AQQPQIY---VKKGVSKCMECNIVFCKYENYLAHKQHYCSARSQEGASEVD-------VKSAVSP 768
                 ||   :.||.: |.||||.|...:|||.||:|||::|.|......|       |..|:||
Zfish   538 -----IYSPLMPKGAT-CFECNITFNNLDNYLVHKKHYCNSRWQHMTKSPDFSSVPDKVSDAISP 596

  Fly   769 S---------------------------------IAGAGGLGAGAAEAASSVE--TTPVAYQQLI 798
            :                                 |..||| .....|....|:  |||...::.:
Zfish   597 NSGHTSVGMLPGCLPSDTDSHVVTTACLNSSVLDIMNAGG-KVPEKELTGQVKKVTTPTGVEERL 660

  Fly   799 -------------------------CAACGIKYTSLDNLRAHQNYYCPKGGAVAAPAATPTDPGQ 838
                                     |.||.|.::..:....|:.|||          ||..||..
Zfish   661 GGKQPEVKSPSTSLVDGDSDPNKTTCEACNITFSRHETYMVHKQYYC----------ATRHDPPM 715

  Fly   839 LGMPKE--------KCGKCKTLHEIGLPCPPPVANPLAAPTVNPQPATNSL----NKC------- 884
            ..|..:        :..|.:.::|:.|  |.....|:     .|||...||    |.|       
Zfish   716 KRMSAKVPAMQRTMRTRKRRKMYEMCL--PEDQRQPM-----GPQPGFLSLHTLGNPCTSQETVE 773

  Fly   885 -------PVCGVVSPTAALAKKHMEMHGTVKAYRCSICQYKGNTLRG-MRTHIRTHFDKKTSDVN 941
                   |.|.:.   ..|..||::...|:..   ||...||||:.. ..........||.|.:.
Zfish   774 NLADRFHPRCDIF---PGLVPKHLDASLTITK---SILAPKGNTVADPQELDAPIDLSKKCSPLP 832

  Fly   942 EEL---------YMTCIF-------EEDASALSQELVTPTGASTTTGHDSMDHP------SQMFN 984
            ::.         |..|..       .|:..|..|.....|.|....|  :::.|      ::..|
Zfish   833 DKSCNSPKRLLDYHECTVCKISFNKVENYLAHKQNFCPVTAAHGEVG--NLEQPIFPGMKTEGNN 895

  Fly   985 CDYCNYVSTYK-----GNVL--------------------------------RHMKLMH------ 1006
            .|.....|:.|     ||.|                                ::|.|.|      
Zfish   896 ADDVYDKSSVKCEKNGGNKLMQNGGMFPPHLGSAPDLKAFADAQLMSSKDENKNMFLPHSLYPGA 960

  Fly  1007 -----------PHVAINSPS-------ISPDTRDQDVTSNPTTNQHSNSDVSNGEAPSFHIKSEP 1053
                       |:..|.|..       :..:..:|:.:||......:.|..:|| .|  |...:|
Zfish   961 IKKVKGTEQISPYFGIKSGDYMAGSLVVQAEAAEQEQSSNGAGEPGTESLAANG-CP--HPNKDP 1022

  Fly  1054 LDPPP------TVNLVHENNNSPIATPHIKAEPIEV-----------GADAAPG---GLVPPMTS 1098
            |...|      .||..|:.:....|||..:.:|...           ||:..|.   .:.|...|
Zfish  1023 LPLLPKNRSMVIVNGGHKEDRQTPATPQQENQPHNTSLPEEQTSPTWGAENPPDPNENVSPTSKS 1087

  Fly  1099 PLGNSS----SVAAAAAAAAEVMKKYCSTCDISFNYVKTYLAHKQFYCKN 1144
            |:.:|:    .:..:|:.|..  .|||..|||.||.:..::.||:|||.:
Zfish  1088 PVEDSAPAGKGINGSASPAGS--GKYCRLCDIQFNNLSNFITHKKFYCSS 1135

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ushNP_001259829.1 C2H2 Zn finger 884..904 CDD:275370 6/33 (18%)
C2H2 Zn finger 912..932 CDD:275370 6/20 (30%)
zf-H2C2_5 983..1007 CDD:290620 10/77 (13%)
zfpm2aXP_009290873.1 zf-C2H2_8 298..381 CDD:292531 22/116 (19%)
C2H2 Zn finger 301..320 CDD:275368 2/18 (11%)
C2H2 Zn finger 337..357 CDD:275368 6/19 (32%)
C2H2 Zn finger 365..385 CDD:275368 7/19 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170576461
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 118 1.000 Inparanoid score I4778
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003584
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12958
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X7185
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
66.040

Return to query results.
Submit another query.