DRSC/TRiP Functional Genomics Resources

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Protein Alignment ush and zfpm2b

DIOPT Version :9

Sequence 1:NP_001259829.1 Gene:ush / 33225 FlyBaseID:FBgn0003963 Length:1212 Species:Drosophila melanogaster
Sequence 2:NP_001034613.1 Gene:zfpm2b / 568464 ZFINID:ZDB-GENE-060130-5 Length:1093 Species:Danio rerio


Alignment Length:1406 Identity:262/1406 - (18%)
Similarity:389/1406 - (27%) Gaps:626/1406 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 DSKDLSAQ--DIGEQKQQQMEDQLEDQLNDSRDPQNNNNNIDDDADEDAEFEEPEKANPQQDQDL 85
            ||::...:  :|.:::.|.:||   |.:..| ||:|..:. |.|...:.|.....|.. |||.| 
Zfish    23 DSEETMCEKKEILKEEDQSVED---DPIYFS-DPENGISK-DGDHSRNGEMGGSVKVE-QQDSD- 80

  Fly    86 GETEMEQEHDLQQE--DLQQELPANSPSTPPRSPSSPQLI--------PKLEQPATPPSE----- 135
            |:.|..|...:..|  |..:||.........:..|...|:        |...:..|..|:     
Zfish    81 GQEERVQSSPVTAEEWDGPRELKIVCEGEERKICSCQALLLGTTWGPFPGKIEATTGGSDKVSLV 145

  Fly   136 -------------------------------------------PEASPC----------PSPSPC 147
                                                       .|.:.|          |.|:|.
Zfish   146 LNGGPRWLMDIMWVSAEDGKSNCAVYSKGGHVWCSTTKNIMEGDELAACVVDLHSHLQTPGPNPY 210

  Fly   148 PTPKYPKVRLNALLASDPALKPDAKELTLPDSRLLA---PPPLVKPDTQAQPEVAEPLLKPARFM 209
            ....||..:|:|:             ..||....:|   |..::..|.               |.
Zfish   211 GQGMYPSRQLDAI-------------QLLPQQAAMASILPGAIINKDI---------------FP 247

  Fly   210 CLPCGIAFSSPSTLEAHQAYYCSHRIKDTDEAGSDKSGAGGSGATAGDAAGLTGGSTEPPAKMA- 273
            |..|||.|.|...|:||..||||.|.:| .|..::|:        |..:..:....|.|...|: 
Zfish   248 CKACGIWFRSERNLQAHLMYYCSGRQRD-PEMVAEKN--------ANISHQMLRNCTYPQCNMSF 303

  Fly   274 ---------------------RTGKQYGCTQCSYSADKKVSLNRHMRMHQTSPAAPTLAGLPSLL 317
                                 .||....||.|.|||:..:.|..|:..|              |.
Zfish   304 AGSHALEMHLSTHNCLKSDEVSTGSNLKCTICDYSAETLMVLQHHILSH--------------LS 354

  Fly   318 QNGIAPPGVTPNPMEDSSSQQTDRYCSHCDIRFNNIKTYRAHKQ---HYCSSRRPEGQLTPKPDA 379
            |.|:.                    |..|...|...:....|::   |.|:       :|.||..
Zfish   355 QTGLR--------------------CGQCHFSFQTPREMAKHQELHGHNCT-------VTNKPIK 392

  Fly   380 SPGAGSGPGSAGGSIGVSAQAATPGKLSPQARNKTPTPAMVAVAAAAAAAAASLQATPHSHPPFL 444
            .....:.|.|.                                                      
Zfish   393 EDKTDNAPNSI------------------------------------------------------ 403

  Fly   445 ALPTHPIIIVPCSLIRAASFIPGPLPTPNSGIVNPETTCFTVDNGTIKPLATALVGATLEPERPS 509
                                      |.||..|..:|....:...|.:...|.:  :.|:....|
Zfish   404 --------------------------TSNSQQVRAKTNINDLQESTAQCDVTQI--SDLQNTDSS 440

  Fly   510 APSSAAEATEAKSSPPEPKRKEAGLTRESAPLDLSLRRSPITLNSLSLRQRQLRNALLDVEEVLL 574
            ..|:..||...                                                      
Zfish   441 QKSNKGEANSG------------------------------------------------------ 451

  Fly   575 AGVGTGKENVETPRGGGSVTPEQIVCAPSLPSSPSMSPSPKRRAISPRSSGAGSASSMSPPGLNV 639
                 .|.|:...|            ..|.||||.::.||.:..:.|        :...||    
Zfish   452 -----NKANLSYSR------------VKSEPSSPRLASSPIQHHLPP--------AFPLPP---- 487

  Fly   640 AVPHL---LDMRSMLPADFGLSESLLAKTNPELALKLAAAAAAAAVAGSSGAAAFPPASLPAQTS 701
            .:||:   .|: :|.|.    :..:|||.:..:..:|           ..|..::||....|   
Zfish   488 FIPHVPFSQDI-TMGPQ----ASEILAKMSELVHRRL-----------RHGGNSYPPVMYSA--- 533

  Fly   702 SGNPGSGGSAGGAQQPQIYVKKGVSKCMECNIVFCKYENYLAHKQHYCSARSQE----------- 755
                              .|.||.: |.||||.|...:|||.||:||||:|.:.           
Zfish   534 ------------------LVPKGAT-CFECNITFNNLDNYLVHKKHYCSSRWENTHKSHDFSGLL 579

  Fly   756 -----------GASEVDVKSAVSPS-IAG---------AGG--------------LGAGAAEAAS 785
                       |||...:.:|..|| :.|         |||              ..:||.|..:
Zfish   580 DKPAGTVSPKIGASLAVMLNAGHPSEVKGQEPKSCNPIAGGKVTDELTVQVKKASTPSGAQERPN 644

  Fly   786 S------------VETTPVAYQQLICAACGIKYTSLDNLRAHQNYYCPKGGAVAAPAATPTDP-- 836
            .            .||.|   ....|.||.|.::..:....|:.|||          ||..||  
Zfish   645 GTQLDLQSQKMPLTETDP---SHTTCEACKITFSRHETYMVHKQYYC----------ATRHDPQI 696

  Fly   837 ---------GQLGMPKEKCGKCKTLHEIGLPCPPPVANP--LAAPTV-NPQPATNSLN------- 882
                     .|..:...|..|...|........||:..|  |..||: .|..:.::|:       
Zfish   697 KRANNKGPANQKAVRPRKRRKAYELANSEQEQMPPMGMPSFLGMPTLGGPYMSKDTLDSFRDHQR 761

  Fly   883 ---------KCP-------------VCGVVSPTAA-----LAKKHMEMHGTVKA--------YRC 912
                     |.|             .|.::|...:     |:||.:...|....        :.|
Zfish   762 YNMIQGLVPKYPEASLTVMKSALVSKCNIISKEESDAPIDLSKKCVPQFGNTPVSPKGLMDYHEC 826

  Fly   913 SICQYKGNTLRGMRTH-------------------IRTHFDKKTSDVNEELYMTCIFE------- 951
            .:|:...|.:.....|                   |:....:.|:::.|    ..:||       
Zfish   827 VVCKISFNKVEDYLKHKQNFCPGTILQSASTENKSIKKEVPRNTNNLLE----NPLFEFPAPRIK 887

  Fly   952 ---------EDASALSQELVTPTGASTTTGHDSMDHPSQMFNCDYCNYVSTY--KGNVLRHMKLM 1005
                     .|..|.|:|.:.||          .|....||...     |||  ....:|..:.:
Zfish   888 TENPNAVPTSDTQASSEEQLIPT----------KDDLRNMFQTS-----STYPSPAKKMRPDEQI 937

  Fly  1006 HPHVAI-----------------NSPSI-SPDTRDQDV-------TSNPTTNQHSNSDVSNGEAP 1045
            .|:..|                 .||:. |...:||.:       |.:|.....|:|...|.|..
Zfish   938 WPYYEIKPTDYATGMLVSQSERRQSPNEGSEGEKDQPMPDGSHLSTDDPENQSQSSSLKDNVEIE 1002

  Fly  1046 SFHIKSEPLD-----PPPTVNLVHENNNSPIAT--PHIKAEPIEVGADAAPGGLVPPMTSPLGNS 1103
            .   |.|..:     |.|...|....|:..:.|  |.||.|.:......|..|       .:.||
Zfish  1003 E---KMEDAENKHESPTPESRLDDPINSKDVTTQMPSIKTEEVSTSLKKALAG-------SIANS 1057

  Fly  1104 SSVAAAAAAAAEVMKKYCSTCDISFNYVKTYLAHKQFYCKN 1144
            |:|            |||..|||.||.:..::.||:|||.:
Zfish  1058 SNV------------KYCRPCDIQFNNLSNFITHKKFYCSS 1086

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ushNP_001259829.1 C2H2 Zn finger 884..904 CDD:275370 6/37 (16%)
C2H2 Zn finger 912..932 CDD:275370 5/38 (13%)
zf-H2C2_5 983..1007 CDD:290620 5/25 (20%)
zfpm2bNP_001034613.1 zf-C2H2_8 294..376 CDD:292531 20/115 (17%)
C2H2 Zn finger 297..316 CDD:275368 2/18 (11%)
C2H2 Zn finger 332..352 CDD:275368 8/19 (42%)
C2H2 Zn finger 360..380 CDD:275368 4/19 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170576462
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 118 1.000 Inparanoid score I4778
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003584
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12958
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
44.080

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