DRSC/TRiP Functional Genomics Resources

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Protein Alignment ush and Zfp445

DIOPT Version :10

Sequence 1:NP_001259829.1 Gene:ush / 33225 FlyBaseID:FBgn0003963 Length:1212 Species:Drosophila melanogaster
Sequence 2:NP_001178731.1 Gene:Zfp445 / 301076 RGDID:1559144 Length:977 Species:Rattus norvegicus


Alignment Length:472 Identity:99/472 - (20%)
Similarity:160/472 - (33%) Gaps:116/472 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   715 QQPQIYVKKGVSKCMECNIVFCKYENYLAH-KQHYCSARSQEGASEVDVKSAVSPSIAGAGGLGA 778
            :..:|:.::....|:.|...|....|:..| |.|....|:||...| |.|...|.|         
  Rat   560 EHQRIHTQEKPYNCIRCRKTFRWKSNFTRHMKLHGKEVRNQERCQE-DFKQNYSQS--------- 614

  Fly   779 GAAEAASSVETTPVAYQQLICAACGIKYTSLDNLRAHQN-------YYCPKGGAVAAPAATPTDP 836
               :..|::|.|      .:|.:||..:|...:|..||.       |.|...|...|..::    
  Rat   615 ---QVISTIEKT------FLCQSCGKTFTQKKSLIEHQRIHTGEKLYQCSGCGKTFASRSS---- 666

  Fly   837 GQLGMPKEKCGKCKTLHEIG-LPCPPPVANPLAAPTVNPQPA--TNSLNKCPVCGVVSPTAALAK 898
             .:...|:|....|...|.| ||.....|..:      ||..  |...|:|..||......:...
  Rat   667 -YIIHMKQKRHAIKIKPESGSLPFSQDTAFAI------PQSGHNTEEPNQCKYCGRAFHNRSFLL 724

  Fly   899 KHMEMHGTVKAYRCSICQ----YKGNTLRGMRTHI-----RTHFDKKTSDVNEELYMTCIFEEDA 954
            .|..:|...|.|:|..|:    ::.|..|..|.|.     :.|..|:||::..:     ||.::.
  Rat   725 IHERIHTREKPYKCRECEKAFRWRSNLYRHERKHFLHKRRKYHESKETSNLQSK-----IFIDEK 784

  Fly   955 SALSQELVTPTGASTTTGHDSMDHP-----SQMFNCDYCNYVSTYKGNVLRHMKLMHPHVAINSP 1014
            ....||    .|.:.|.....:||.     .:.|.|:.|.........::.|.::          
  Rat   785 PFWCQE----CGKTFTRKRSLLDHKGIHSGERRFKCNLCEKSFDRNYRLVNHQRI---------- 835

  Fly  1015 SISPDTRDQDVTSNPTTNQHSNSDVSNGEAPSFH------IKSE---PLDPPPTVNLVHENNNSP 1070
                     ..|..|..:|..:.|.:...|.|..      ::||   ..|.|         ..|.
  Rat   836 ---------HTTEQPFQSQWHDKDFAGTHAHSVDQRKHRTLQSEYSLQSDKP---------GLSY 882

  Fly  1071 IATPHIKAEPIEVGADAAPGGLVPPMTSPLGNSSSVAAAAAAAAEVMKK----YCSTCDISFNYV 1131
            .....:..:.:|:..           ..||.|.|..::.:.|...|..|    .||||..:|...
  Rat   883 CQDVRVNIQELELSG-----------KKPLDNPSHESSMSTAFQNVPTKKACHKCSTCGKTFRKH 936

  Fly  1132 KTYLAHKQFYCKNKPIR 1148
            ...::||:.:.|.:|.:
  Rat   937 SHLISHKRCHTKERPFK 953

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ushNP_001259829.1 zf-H2C2_5 279..301 CDD:404746
C2H2 Zn finger 884..904 CDD:275370 4/19 (21%)
C2H2 Zn finger 912..932 CDD:275370 6/28 (21%)
zf-H2C2_5 983..1003 CDD:404746 4/19 (21%)
Zfp445NP_001178731.1 SCAN 49..161 CDD:128708
KRAB 213..271 CDD:214630
C2H2 Zn finger 462..482 CDD:275368
COG5048 <465..596 CDD:227381 8/35 (23%)
C2H2 Zn finger 490..510 CDD:275368
COG5048 536..962 CDD:227381 99/472 (21%)
C2H2 Zn finger 545..565 CDD:275368 0/4 (0%)
C2H2 Zn finger 573..593 CDD:275368 6/19 (32%)
C2H2 Zn finger 626..646 CDD:275368 7/19 (37%)
C2H2 Zn finger 654..730 CDD:275368 19/86 (22%)
C2H2 Zn finger 738..758 CDD:275368 5/19 (26%)
C2H2 Zn finger 788..808 CDD:275368 6/23 (26%)
C2H2 Zn finger 816..836 CDD:275368 3/38 (8%)
C2H2 Zn finger 844..864 CDD:275370 4/19 (21%)
C2H2 Zn finger 926..946 CDD:275368 7/19 (37%)
C2H2 Zn finger 954..974 CDD:275368 99/472 (21%)
Blue background indicates that the domain is not in the aligned region.

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