DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ush and Zfpm1

DIOPT Version :10

Sequence 1:NP_001259829.1 Gene:ush / 33225 FlyBaseID:FBgn0003963 Length:1212 Species:Drosophila melanogaster
Sequence 2:NP_033595.1 Gene:Zfpm1 / 22761 MGIID:1095400 Length:995 Species:Mus musculus


Alignment Length:1291 Identity:271/1291 - (20%)
Similarity:385/1291 - (29%) Gaps:528/1291 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 EKANPQQ------DQDLGETEMEQEHD-LQQEDLQQELPA-NSPSTPPRSPSSPQLIPKLEQPAT 131
            :::||:|      |.:.||.....:.. .:||....|.|| ..|.:|||...||..:|   .|..
Mouse     5 KQSNPRQIKRSLRDMEAGEEAKAMDSSPKEQEAPDPEAPAIEEPPSPPREDVSPPAVP---APPE 66

  Fly   132 PPSEPE-------------------------ASPCPSPSPCPT-----PKYPKVRLNAL--LASD 164
            .|.:||                         |||...|.....     .:..:.||:..  |:..
Mouse    67 SPEDPEDMEGQELEMRPQDEEKEEKEEEAAMASPWSGPEELELALQDGQRCVRARLSLTEGLSWG 131

  Fly   165 P--------ALKPDAKE------LTLPDS------------------------------------ 179
            |        ||.|:.:|      |.:.:|                                    
Mouse   132 PFYGSIQTRALSPEREEPGPAVTLMVDESCWLRMLPQVLTEEAANSEIYRKDDALWCRVTKVVPS 196

  Fly   180 ------RLLAPP------PLVKP-----------DTQAQPE-------VAEPLLKPARFMCLPCG 214
                  ||:..|      |:.:|           |.|..|:       :|..::....|.|..||
Mouse   197 GGLLYVRLVTEPHGAPRHPVQEPVEPGGLAPVHTDIQLLPQQAGMASILATAVINKDVFPCKDCG 261

  Fly   215 IAFSSPSTLEAHQAYYCSHRIKDTDEAGSDKSGAGGSGATAGDAAGLTGGSTEPPAKMARTGKQY 279
            |.:.|...|:||..|||:.|    ..|||..|                 .:.|.|.:.....:..
Mouse   262 IWYRSERNLQAHLLYYCASR----QRAGSPVS-----------------ATEEKPKETYPNERVC 305

  Fly   280 GCTQCSYSADKKVSLNRHMRMHQTSPAAPTLAGLPSLLQNGIAPPGVTPNPMEDSSSQQTDR--- 341
            ...||..|.....||..|||.|........|..|.:.         .|....|......||.   
Mouse   306 PFPQCRKSCPSASSLEIHMRSHSGERPFVCLICLSAF---------TTKANCERHLKVHTDTLSG 361

  Fly   342 YCSHC-------DIRFNNIKTYRAHKQHYCSSRRPEGQLTPKPDASPGAGSGPGSAGGSIGVSAQ 399
            .|.:|       ||.::::.|     .|.......:|::     .|||||. |.:          
Mouse   362 VCHNCGFISTTRDILYSHLVT-----NHMVCQPGSKGEI-----YSPGAGH-PAA---------- 405

  Fly   400 AATPGKLSPQARNKTPTPAMVAVAAAAAAAAASLQATPHSHPPFLALPTHPIIIVPCSLIRAASF 464
                 ||.|.                   :.|..|.....|.|          :||..       
Mouse   406 -----KLPPD-------------------SLAGFQQHSLMHSP----------LVPAD------- 429

  Fly   465 IPGPLPTPNSG------IVNPETTCFTVDNGTIKPLATALVGATLEPERPSAPSS----AAEATE 519
               ..|||:||      :.|.||.....:.|:              .|.|:||.:    |||..|
Mouse   430 ---KAPTPSSGLDSKAEVTNGETRVPPQNGGS--------------SESPAAPRTIKVEAAEEPE 477

  Fly   520 AKSSPPEPKRKEAGLTRESAPLDLSLRRSPITLNSLSLRQRQLRNALLDVEEVLLAGVGTGKENV 584
            |              ||.|.|                                            
Mouse   478 A--------------TRASGP-------------------------------------------- 484

  Fly   585 ETPRGGGSVTPEQIVCAPSLPSSPSMSPSPKRRAISPRSSGAGSASSMSPPGLNVAVPHLLDMRS 649
                  |...|:    |||...||. ||:|.|  :....|.....||..|..|.:|....|....
Mouse   485 ------GEPGPQ----APSRTPSPH-SPNPVR--VKTELSSPTPGSSPGPGELTMAGTLFLPQYV 536

  Fly   650 MLPADFGLSESLLAKTNPELALKLAAAA--AAAAVAGSSGAAAFPPASLPAQTSSGNPGSGGSAG 712
            ..| |.|.:....|....|:..|::...  .....|||||||..|....     ||..|      
Mouse   537 FSP-DAGTTTVPTAPQASEILAKMSELVHNRLQQGAGSSGAAGTPTGLF-----SGTKG------ 589

  Fly   713 GAQQPQIYVKKGVSKCMECNIVFCKYENYLAHKQHYCSAR--SQEGASEVDVKSAVSPSIAGAGG 775
                         :.|.||.|.|....|:..||:.|||.|  .::..:....|:|..|:.|.||.
Mouse   590 -------------ATCFECEITFNNINNFYVHKRLYCSGRRAPEDPPTVRRPKAATGPARAPAGA 641

  Fly   776 L----------GAGAAEAASSVETTPVAY-----------------------QQLICAACGIKYT 807
            .          |.|..|..:|..|||.|.                       .:.:|.||.|:::
Mouse   642 AAEPDPSRSSPGPGPREEEASGTTTPEAEAAGRGSEGSQSPGSSVDDAEDDPSRTLCEACNIRFS 706

  Fly   808 SLDNLRAHQNYYC-------PKGGAVAAPAATPTDPG----QLGMPKEKCGKCKTLHEIGLP--- 858
            ..:....|:.|||       |:     .|.|..|.||    .|..|..:..:.:.|:|  ||   
Mouse   707 RHETYTVHKRYYCASRHDPPPR-----RPPAPTTAPGPAAPALTAPPVRTRRRRKLYE--LPAAG 764

  Fly   859 CPPPVANPLAAPTV---------NPQPATNSLNKCPVC-------GVV------------SPTA- 894
            .|||.|.|...|.|         :|:|.:.|....|..       |.:            :||| 
Mouse   765 APPPAAGPAPVPVVPSPTAELPSSPRPGSASAGPAPALSPSPVPDGPIDLSKRPRRQSPDAPTAL 829

  Fly   895 -ALAKKHMEMHGTVKAYRCSICQYKGNTLRGMRTHIRTHFDKKTSDVNEELYMTCIFEEDASALS 958
             |||..|          .|:.|:...::|.....|      ||.|         |          
Mouse   830 PALADYH----------ECTACRVSFHSLEAYLAH------KKYS---------C---------- 859

  Fly   959 QELVTPTGASTTTGHDSMDHPSQMFNCDYCNYVSTYKGNVLRHMKLMHPHVAINSPSISPDTRDQ 1023
                 |.....||.           .|.||......:|:::.|::..| .:.:..|:.||....:
Mouse   860 -----PAAPLRTTA-----------LCPYCPPNGRVRGDLVEHLRQAH-GLQVAKPAASPGAEPR 907

  Fly  1024 DVTSNPTTNQHSNSDVSNGEAPSFHIKSEPLDPPPTVNLVHENNNSPIATPHIKAEPIEVGADAA 1088
                  |..:.:..|..:|.||.        .|.|          :|..||   ::|.:.||...
Mouse   908 ------TPAERAPRDSPDGRAPR--------SPSP----------APENTP---SDPADQGARTP 945

  Fly  1089 PGGLVPPMTSPLGNSSSVAAAAAAAAEVMKKYCSTCDISFNYVKTYLAHKQFYCKN 1144
            ..|...|..:|.|...             .:||..|:|.|:.:.|::|||::||.:
Mouse   946 SKGPPAPAPAPGGGGG-------------HRYCRLCNIRFSSLSTFIAHKKYYCSS 988

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ushNP_001259829.1 zf-H2C2_5 279..301 CDD:404746 8/21 (38%)
C2H2 Zn finger 884..904 CDD:275370 9/40 (23%)
C2H2 Zn finger 912..932 CDD:275370 4/19 (21%)
zf-H2C2_5 983..1003 CDD:404746 5/19 (26%)
Zfpm1NP_033595.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..103 25/100 (25%)
PR-SET_ZFPM1 101..209 CDD:380992 13/107 (12%)
C2H2 Zn finger 257..290 CDD:275368 16/53 (30%)
C2H2 Zn finger 308..327 CDD:275368 8/18 (44%)
PHA00733 <332..387 CDD:177301 12/68 (18%)
C2H2 Zn finger 335..355 CDD:275368 4/28 (14%)
Interaction with TACC3. /evidence=ECO:0000269|PubMed:15234987 343..354 2/10 (20%)
C2H2 Zn finger 363..380 CDD:275368 4/16 (25%)
PspC_subgroup_2 <415..>522 CDD:468202 41/211 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 424..526 41/206 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 616..694 15/77 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 721..827 24/112 (21%)
PRK12323 <789..>941 CDD:481241 43/230 (19%)
Interaction with CTBP2 811..817 0/5 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 892..960 20/94 (21%)

Return to query results.
Submit another query.