DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cbt and klf2

DIOPT Version :9

Sequence 1:NP_722636.1 Gene:cbt / 33224 FlyBaseID:FBgn0043364 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_001016764.1 Gene:klf2 / 549518 XenbaseID:XB-GENE-485035 Length:373 Species:Xenopus tropicalis


Alignment Length:358 Identity:100/358 - (27%)
Similarity:140/358 - (39%) Gaps:109/358 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 KLDDDQKAERVSV----IMRVNSSGAVSSSSQDENSSS------------------------STS 127
            |.|.:.|:.|.|.    :|:  |..|.|:..:||:.::                        |.|
 Frog    21 KCDYESKSPRSSCGIPDVMQ--SPDAFSTKKEDEDLNNVLEFVLAMGGDKSVQICGEYSMAPSES 83

  Fly   128 C---CSSSSNTNTSTSSVPPTVE-------------DDY-PEANVWRNLKFKMNRKRAAEVALPP 175
            |   .:|.|..:.||...||...             |:| ..:||........|......:...|
 Frog    84 CNYYQTSPSPGSYSTDHSPPPYSSGSLMTELIRSDMDNYCHPSNVQGRFFVTSNFDFPDTIKAEP 148

  Fly   176 VQTPETPVAKLVTPPAPAECIK-EEEIKPILTPIYVSPVASSASQL------------ILLSTVA 227
            ......||..:|    |..|.| ::|........|..|..:::.|:            |:||...
 Frog   149 DMDSYGPVMGMV----PQSCTKIKQEGSTACMMAYEQPRLANSPQMGGPDTPPLSPDDIMLSECQ 209

  Fly   228 AQ--------------------QSPTPVPKTPT--MSEEKLTTRITAAQAAAT------------ 258
            :|                    |||.....|..  |.|:.|..:.:.|:...|            
 Frog   210 SQLMCHPSVPYGHNYQHTGFHHQSPVQYQNTSQYGMFEDNLPMQPSIARGMITPPCSPLEILDTK 274

  Fly   259 -----------RSRIYECSFPDCGKNYFKSSHLKAHQRVHTGERPFICKWENCDKRFSRSDELSR 312
                       |:..:.||:..|||.|.||||||||.|.||||:|:.|.||.|..:|:|||||:|
 Frog   275 PKRGRRSWPRKRTATHTCSYAGCGKTYTKSSHLKAHLRTHTGEKPYHCNWEGCGWKFARSDELTR 339

  Fly   313 HKRTHTGEKKFQCSVCQKKFMRSDHLSKHVKRH 345
            |.|.|||.:.|||.:|.:.|.|||||:.|:|||
 Frog   340 HFRKHTGHRPFQCHLCDRAFSRSDHLALHMKRH 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cbtNP_722636.1 zf-C2H2 263..287 CDD:278523 15/23 (65%)
C2H2 Zn finger 265..287 CDD:275368 15/21 (71%)
COG5048 <270..362 CDD:227381 48/76 (63%)
zf-H2C2_2 279..306 CDD:290200 16/26 (62%)
C2H2 Zn finger 295..317 CDD:275368 13/21 (62%)
zf-H2C2_2 309..332 CDD:290200 12/22 (55%)
zf-C2H2 323..345 CDD:278523 12/21 (57%)
C2H2 Zn finger 325..345 CDD:275368 10/19 (53%)
klf2NP_001016764.1 COG5048 <285..368 CDD:227381 47/82 (57%)
C2H2 Zn finger 292..314 CDD:275368 15/21 (71%)
C2H2 Zn finger 322..344 CDD:275368 13/21 (62%)
zf-H2C2_2 336..361 CDD:372612 13/24 (54%)
C2H2 Zn finger 352..372 CDD:275368 10/19 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 44 1.000 Domainoid score I12077
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.