DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cbt and Klf12

DIOPT Version :10

Sequence 1:NP_722636.1 Gene:cbt / 33224 FlyBaseID:FBgn0043364 Length:428 Species:Drosophila melanogaster
Sequence 2:XP_063130396.1 Gene:Klf12 / 306110 RGDID:1309204 Length:571 Species:Rattus norvegicus


Alignment Length:65 Identity:18/65 - (27%)
Similarity:28/65 - (43%) Gaps:15/65 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 MDTLLPSPPATPPLRENKLEIVAKD----EQQVNENLLKAKLKLVAQKSQKNGGIITPNPSDTED 63
            :|..||..||.|     .|.|..||    ::.....:..|.|.::|:|.::      |..|.||:
  Rat   461 LDIELPEDPAIP-----LLGIYPKDASTYKRDTCSTMFIAALFIIARKWKE------PRCSSTEE 514

  Fly    64  63
              Rat   515  514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cbtNP_722636.1 C2H2 Zn finger 265..287 CDD:275368
COG5048 <270..362 CDD:227381
C2H2 Zn finger 295..317 CDD:275368
zf-H2C2_2 309..332 CDD:463886
C2H2 Zn finger 325..345 CDD:275368
Klf12XP_063130396.1 None
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.