DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shv and AT1G10350

DIOPT Version :10

Sequence 1:NP_608525.1 Gene:shv / 33220 FlyBaseID:FBgn0031256 Length:354 Species:Drosophila melanogaster
Sequence 2:NP_172506.1 Gene:AT1G10350 / 837574 AraportID:AT1G10350 Length:349 Species:Arabidopsis thaliana


Alignment Length:354 Identity:112/354 - (31%)
Similarity:164/354 - (46%) Gaps:37/354 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 GRDFYKILNVKKNANTNEVKKAYRRLAKELHPDKN-KDDPDASTKFQDLGAAYEVLSNPDKRKTY 86
            |.|:|.:|.|.:|||.:::||:|||:|.:.||||| ....:|..||:.:..||:|||:|.:|:.|
plant     2 GVDYYNVLKVNRNANEDDLKKSYRRMAMKWHPDKNPTSKKEAEAKFKQISEAYDVLSDPQRRQIY 66

  Fly    87 DRCGEECLKKEGMMD-------------------------HGGDPFSSFFGDFGFHFGGDGQQQD 126
            |:.|||.||...:..                         ...|.|:.|||:.|..|||....:.
plant    67 DQYGEEGLKSTDLPTAAETAAHQQQRSYSSSNSEFRYYPRDAEDIFAEFFGESGDAFGGGSSGRT 131

  Fly   127 APRGADIVMDLYVSLEELYSGNFVEIVRNKPVTKPASG-----TRKCNCRQEMVTRNLGPGRFQM 186
            ...|.|.....:.|.|.....|......||..|.||:.     ..|..|..|.:.:  |..:...
plant   132 RGDGGDGGGRRFKSAEAGSQANRKTPPTNKKTTPPANRKAPAIESKLACTLEELYK--GAKKKMR 194

  Fly   187 IQQTVCDECPNVKLVNEERTLEIEVEQGMVDGQETRFVAEGEPHIDGEPGDLIVRVQQMPHPRFL 251
            |.:.|.|:....|.|.|  .|:|:::.|...|.:..|..:|.......|.|||..|.:.||..|.
plant   195 ISRVVPDDFGKPKTVQE--ILKIDIKPGWKKGTKITFPEKGNQEPGVTPADLIFVVDEKPHSVFK 257

  Fly   252 RKNDDLYTNVTISLQDALVGFSMEIKHLDGHLVPVTREKVTWPGARIRKKGEGMPNFENNNLTGN 316
            |..:||.....:||.|||.|.::.:..|||..:.:....:..||..|....||||. ::....|:
plant   258 RDGNDLILEKKVSLIDALTGLTISVTTLDGRSLTIPVLDIVKPGQEIVIPNEGMPT-KDPLKRGD 321

  Fly   317 LYITFDVEFPKKDLTEEDKEALKKILDQS 345
            |.:||::.||.: ||.|.|..||::|..|
plant   322 LRVTFEILFPSR-LTSEQKNDLKRVLGGS 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shvNP_608525.1 DnaJ_bact 25..345 CDD:274090 110/350 (31%)
AT1G10350NP_172506.1 DnaJ_bact 4..343 CDD:274090 107/344 (31%)

Return to query results.
Submit another query.