DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shv and dnajb4

DIOPT Version :10

Sequence 1:NP_608525.1 Gene:shv / 33220 FlyBaseID:FBgn0031256 Length:354 Species:Drosophila melanogaster
Sequence 2:NP_001003455.1 Gene:dnajb4 / 445061 ZFINID:ZDB-GENE-040801-192 Length:340 Species:Danio rerio


Alignment Length:376 Identity:114/376 - (30%)
Similarity:174/376 - (46%) Gaps:90/376 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 GRDFYKILNVKKNANTNEVKKAYRRLAKELHPDKNKDDPDASTKFQDLGAAYEVLSNPDKRKTYD 87
            |:|:||||.:.|.|:.:::|||||:.|.:.|||||| ..:|..||:::..||||||:|.||:.||
Zfish     2 GKDYYKILGITKGASDDDIKKAYRKQALKWHPDKNK-AANAEEKFKEVAEAYEVLSDPKKREIYD 65

  Fly    88 RCGEECLKKEGMMDHG----------GDP---FSSFFG--------------------------- 112
            :.|||.||..|....|          |||   |::|||                           
Zfish    66 QYGEEGLKGGGGASDGPGGNFTYTFHGDPHATFATFFGGASPFEVFFGRKVNGRDEDDMEVDGND 130

  Fly   113 DFG----FHFGGDGQQQDAPRGAD--------IVMDLYVSLEELYSGNFVEIVRNKPVTKPASGT 165
            .||    |:..|..:::...:|..        |..:|.|||||::.|:          ||     
Zfish   131 PFGSFTSFNINGFPRERHVGQGGPPRRKQDPAIHHELRVSLEEVFHGS----------TK----- 180

  Fly   166 RKCNCRQEMVTRNLGP-GRFQMIQQTVCDECPNVKLVNEERTLEIEVEQGMVDGQETRFVAEGEP 229
                 |.::..:.|.| ||               .|..|::.|.||:::|..:|.:..|..||:.
Zfish   181 -----RMKISRKRLNPDGR---------------TLRTEDKILTIEIKRGWKEGTKITFPREGDE 225

  Fly   230 HIDGEPGDLIVRVQQMPHPRFLRKNDDLYTNVTISLQDALVGFSMEIKHLDGHLVPVTREKVTWP 294
            ..:..|.|::..::..||..|.|:..|:...|.:||:.:|.|.|:.:..:||....:....|..|
Zfish   226 TPNTIPADIVFVIKDKPHGHFRREGSDIVYPVRVSLRQSLCGCSVTVSTIDGKTCNMKITDVIKP 290

  Fly   295 GARIRKKGEGMPNFENNNLTGNLYITFDVEFPKKDLTEEDKEALKKILDQS 345
            |.|....|:|:|..:|....|:|.:.|||.|| :.|....|:.||:.|..|
Zfish   291 GMRKVIAGQGLPFPKNPEQRGDLIVEFDVNFP-ESLPTNAKDVLKRHLPVS 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shvNP_608525.1 DnaJ_bact 25..345 CDD:274090 112/372 (30%)
dnajb4NP_001003455.1 DnaJ_bact 4..334 CDD:274090 109/366 (30%)

Return to query results.
Submit another query.