DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment crq and scarb2

DIOPT Version :9

Sequence 1:NP_001245823.1 Gene:crq / 33219 FlyBaseID:FBgn0015924 Length:491 Species:Drosophila melanogaster
Sequence 2:NP_001016557.1 Gene:scarb2 / 549311 XenbaseID:XB-GENE-948022 Length:483 Species:Xenopus tropicalis


Alignment Length:512 Identity:138/512 - (26%)
Similarity:238/512 - (46%) Gaps:78/512 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 W-VFGLGSVFLLLGILIVVF-----WPGIADNLVEDGLTLKPGTDAYESWLEAPIPIYLSFYMFN 72
            | |||..:|.:.|.|:.:|.     :..|.:..|:..:.||..::.:|.|...|.|:|:.||.||
 Frog     4 WAVFGTAAVSVTLLIVSIVLLLTHTFMDIVEGQVKQAIVLKNESEVFEDWANPPPPVYMQFYFFN 68

  Fly    73 WTNPEDIRNPDIKPNFVEMGPYTFLEKHKKENYTFYDNAT-VAYYERRTWFFDPERSNGTLD-DM 135
            .|||.::.:.: ||...|:||||:.|...:||.||..|.| |:....:|:.|:||:|.|... |:
 Frog    69 VTNPLEVLSGE-KPFVDEIGPYTYREYRPRENITFSVNGTEVSAVTPKTYVFEPEKSIGDPKVDL 132

  Fly   136 VTAAHAITATVADEMRDQRKIVKKIINFMLNHEGGKLYVTKPVGEWIFEGYQDNITDFLNLFNTT 200
            :...:....|:.:..:|...:...||..:..::.| ::||:.|.|.:: ||:|.:...|:     
 Frog   133 IRTVNIPLVTILEMTKDSSLLRPFIIAALKTYKEG-MFVTRTVDELLW-GYKDAVLSILH----- 190

  Fly   201 KIDIPYKR-----FGWLADRNESLTYDGLFTIHTGTDDISNLGRLTHWNGKSETGFYEM-PCGIV 259
                |:|:     ||.....|  .|.||.:...:|..|.....::..|.|:....::.. .|.::
 Frog   191 ----PFKKNISDTFGLFYKMN--TTDDGEYIFLSGEKDYLEFTQIAEWKGQKALNWWTTETCNMI 249

  Fly   260 NGTTGDMFPPKMNVNDEITIFATDACRFM--------NLR---------PRGTYENHGLTATKWV 307
            |||.|..|.|.:|.:|.|.:|::|.||.:        |::         |...:.|..:.     
 Frog   250 NGTDGTSFHPLLNKDDTIYMFSSDLCRSIYAVYESSENIKDISVFRFSPPASVFANVSVN----- 309

  Fly   308 GTEETLDSGENYPNQACFCDEARFDECPKTGVVECKACRDKAPIYSSFPHFYLADQSYVDAVSGM 372
                        |....||  .....|..:|::....|::.|||..|.||||.||::.::::.||
 Frog   310 ------------PQNKGFC--VPEGNCLPSGLLNVSICKEGAPIVLSSPHFYQADENVINSIRGM 360

  Fly   373 KPEKEKHEFFLAVEPITGVPVQVHGRIQINMMIEPDDDFDIYRGVQKVLMPMFWFDQYAELSSEL 437
            ||.||.|..||.:.|:||..:|...|||:|:.:...:.:.|.:.:|.:..|:...::...:..:.
 Frog   361 KPVKEHHMTFLDLNPLTGTLIQAAKRIQVNVYVRKINVYLITQDIQTLFFPVMHLNESVLIDDKS 425

  Fly   438 ASK-------AKLAINLSSYGIIFGYSMIAFASVFLITGITLTVTKKWVRRTPEDED 487
            |.:       .::..|:..  ||.|..:|.   .||.|  ||:..:|..|....:|:
 Frog   426 AGRLRSILFQGRVVANIPF--IIMGLGIIL---AFLFT--TLSCLQKRSRDEGTEEE 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crqNP_001245823.1 CD36 19..470 CDD:307331 129/487 (26%)
scarb2NP_001016557.1 CD36 29..460 CDD:366481 125/470 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR11923
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X155
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.110

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