DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment crq and scav-1

DIOPT Version :9

Sequence 1:NP_001245823.1 Gene:crq / 33219 FlyBaseID:FBgn0015924 Length:491 Species:Drosophila melanogaster
Sequence 2:NP_508919.2 Gene:scav-1 / 180812 WormBaseID:WBGene00015389 Length:563 Species:Caenorhabditis elegans


Alignment Length:565 Identity:130/565 - (23%)
Similarity:212/565 - (37%) Gaps:142/565 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 VFGLGSVFLLLGILIVV-FWPGIADNLVED----GL----TLKPGTDAYESWLEAPIPIYLSFYM 70
            :|.:|:..|:.|::||: .:|.|.:|.:.|    ||    ||...||   ||:.:.....:.:::
 Worm    15 IFLIGAALLVAGLVIVLNVFPNIVNNQINDSKVLGLNADGTLNSFTD---SWVNSKYISTMQYWV 76

  Fly    71 FNWTNPEDIRNPDIKPNFVEMGPYTFLEKHKKENYTFYDNAT-VAYYERRTWFFDPERSNGTLD- 133
            :::||...|.|..|.|:..|.|||.|.|....:...|.:|.. :.:.:.:|:.|:|.:|....| 
 Worm    77 YDYTNTIGIMNRAIYPDVREKGPYAFDEILTMDKLNFSENGEFMEFRQIQTFVFNPNKSCAGCDP 141

  Fly   134 --------DM----------------------VTAAHAITATVADEMRDQRKIVKKIINF--MLN 166
                    ||                      .|..|||       |:.:....:...|.  ::.
 Worm   142 YKDKVLIPDMGFQVGIDQIDTVIEGILKNPLAATICHAI-------MKGKPNANQTCSNLGALIE 199

  Fly   167 HEGGKL--------YVTKPVGEWIFEGYQDNITDFLNLFNTTKIDIPYKRFGW----LADRNESL 219
            .|.|.|        :.|..|.:.:|.||:   |.|:..|....:.:.:..||.    |.|....|
 Worm   200 GELGTLISLFNVSPFTTVTVDQLLFSGYK---TPFVEKFLDEALGMLHFLFGTAPKPLDDPPIQL 261

  Fly   220 -----TYDGLFTIHTGTDDISNLGRLTHWNGKSETGFYE-----MP-----------CG------ 257
                 |.|.:.|:.||..|....|.:|.:...|....:.     :|           |.      
 Worm   262 NPLNGTSDIINTVLTGKTDPLKAGYMTEFRSISNNSLFNSIGNTLPPMWWPYANKTYCKDPNSAL 326

  Fly   258 IVNGTTGDMFPPKMNVNDEITIFATDACRFMN-----------------LRPRGTY-----ENHG 300
            ::.||.||.|...:...|.:..|.:|.||.::                 :.|...:     ||.|
 Worm   327 VLTGTNGDYFKNFVKKTDILPAFVSDVCRTIHFVFDREVTVKGFKGYRFVMPPTQFDYSLDENCG 391

  Fly   301 LTATKWVGTEETLDSGENYPNQACFCDEARFDECPKTGVVECKACRDKAPIYSSFPHFYLADQSY 365
            .......|:.|       ||.|:.         |..:|:::...|.. .||..|.||||.|.:..
 Worm   392 YCIPLKYGSYE-------YPAQSA---------CLPSGLLDISQCTG-GPIIMSKPHFYQASKVV 439

  Fly   366 VDAVSGMKPEKEKHEFFLAVEPITGVPVQVHGRIQINMMIEPDDDFDIYRGVQKVLMPMFW---- 426
            ...|...||..:..|..|.:||.||..:|...|:||||::........|..::....|:.|    
 Worm   440 SKFVPRFKPTYDNDETMLDIEPNTGTVLQAQKRLQINMLVNQFKHIRSYSVMRPGAYPLAWVNES 504

  Fly   427 --FDQYA--ELSSELASKAKLAINLSSYGIIFGYSMIAFASVFLI 467
              .||..  :|:|:|.:.......:....:..|..:||.:.|.:|
 Worm   505 FYMDQNTIDQLNSQLFTPVSTVNTICWIAVGLGAGLIALSIVMVI 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crqNP_001245823.1 CD36 19..470 CDD:307331 129/561 (23%)
scav-1NP_508919.2 CD36 19..546 CDD:279474 127/556 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3776
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45589
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm4750
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR11923
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.930

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