DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment crq and scav-3

DIOPT Version :9

Sequence 1:NP_001245823.1 Gene:crq / 33219 FlyBaseID:FBgn0015924 Length:491 Species:Drosophila melanogaster
Sequence 2:NP_499625.2 Gene:scav-3 / 176673 WormBaseID:WBGene00013039 Length:534 Species:Caenorhabditis elegans


Alignment Length:533 Identity:135/533 - (25%)
Similarity:229/533 - (42%) Gaps:78/533 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 VFG----LGSVFLLLGILIVVFWP--GIADNLVED----GLTL-KPGTDA----YESWLEAPIPI 64
            :||    ||.:....|:|:::..|  .|.:..|.|    |.|. :.||:.    .:|||:....:
 Worm     8 LFGSAIILGLLLAAAGVLLLIGIPIDRIVNRQVIDQDFLGYTRDENGTEVPNAMTKSWLKPLYAM 72

  Fly    65 YLSFYMFNWTNPEDIRNPDIKPNFVEMGPYTFLEKHKKENYTFYDNATVAYYE-RRTWFFDPERS 128
            .|:.:|||.||.:.|.....|||..|:||:.|.|..:|..:.|.||.|..:|: ::.:.|:...|
 Worm    73 QLNIWMFNVTNVDGILKRHEKPNLHEIGPFVFDEVQEKVYHRFADNDTRVFYKNQKLYHFNKNAS 137

  Fly   129 NGT--LDDMVTAAHAITATVADEMRDQRKI------VKKIINFMLNHEGGKLYVTKPVGEWIFEG 185
            ..|  ||..||    |...|..::.|...:      :|..|..:|.......|:|..|.:.:|:|
 Worm   138 CPTCHLDMKVT----IPNIVFQKLIDAADVTIFGVRIKFAIESVLKMVSEAPYITVKVSDALFDG 198

  Fly   186 YQDNITDFL-------NLFNTTKIDIPYKRFGWLADRNESLTYDGLFTIHTGTDDISNLGRLTHW 243
            |:|.|.|.:       .|..|..:.   :|.|:...:|.  |.||::.:..|....|.:|.|..|
 Worm   199 YEDPIIDIVCKNKILQFLCETNSLQ---RRVGFFYGQNG--TTDGIYEVDAGVPSPSKIGHLYTW 258

  Fly   244 NGKSETGFYEMPCG--------IVNGTTGDMFPPKMNVNDEITIFATDACRFMNLRPRGTYENHG 300
            |..:     |||.|        ::|||.|.:|.|.:...|.:|||....||.:.:........:|
 Worm   259 NNMT-----EMPEGTWDTKYARMINGTDGQLFSPMLKREDRLTIFVPQICRSIQMEYTKDVAVNG 318

  Fly   301 LTATKWVGTEETLDSGENYPNQACFCDE-----------ARFDECPKTGVVECKACRDKAP-IYS 353
            :.:.::....:..|..  .|....||::           .:.:.|...|:::...|:...| :|.
 Worm   319 VPSWRYAPPLDLYDPA--LPQNRAFCNKNGMPRYFDNTTVQIENCLPAGLIDLSRCQAGNPRVYL 381

  Fly   354 SFPHFYLADQSYVDAVSGMK-PEKEKHEFFLAVEPITGVPVQVHGRIQINM-MIEPDDDFDIYRG 416
            |.||||.:......:|:|:. |........:.:||..|||.|....:|||: |::  ....:...
 Worm   382 SNPHFYNSPMELWHSVTGLSVPTASNDLTVVDIEPTAGVPTQAKRIMQINVGMVK--GSLSVTEN 444

  Fly   417 VQKVLMPMFWFDQYAELSSELASKAKLAINLSSYGIIFG-----YSMIAFASVFLITGI--TLTV 474
            ...|::|:.|.::.|........:.....|...|..|.|     ..:||:.:||::..:  ..:.
 Worm   445 TTNVVVPVLWMNETAYFDQGTRDQLINIFNAKHYSFIGGVISLSLGLIAWLAVFVVIIVYSRQSD 509

  Fly   475 TKKWVRRTPEDED 487
            .:::.|...||||
 Worm   510 EEEYGRLVLEDED 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crqNP_001245823.1 CD36 19..470 CDD:307331 127/504 (25%)
scav-3NP_499625.2 CD36 52..499 CDD:279474 117/464 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3776
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S5605
OMA 1 1.010 - - QHG45589
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm4750
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR11923
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X155
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
98.880

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