DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment crq and scarb1

DIOPT Version :9

Sequence 1:NP_001245823.1 Gene:crq / 33219 FlyBaseID:FBgn0015924 Length:491 Species:Drosophila melanogaster
Sequence 2:XP_002935333.1 Gene:scarb1 / 100490714 XenbaseID:XB-GENE-494666 Length:505 Species:Xenopus tropicalis


Alignment Length:503 Identity:156/503 - (31%)
Similarity:252/503 - (50%) Gaps:47/503 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 GETQRKVWVFG-LGSVFLLLGILIVVFWPGIADNLVEDGLTLKPGTD-AYESWLEAPIPIYLSFY 69
            |...:|..||| ||.:.:.:|.|:|...|.|.|..||..:.:.|.:. |||.|.:.|:|.|:|.|
 Frog     3 GVGNKKSIVFGVLGVLLVGVGTLLVFLVPVIMDEQVEKNVRIDPSSGFAYEMWRDLPVPFYMSIY 67

  Fly    70 MFNWTNPEDIRNPDIKPNFVEMGPYTFLEKHKKENYTFYDNATVAYYERRTWFFDPERSNGTLDD 134
            :|...|.:::...: ||...|.|||.:.|..||:|.||.:|.||::.|.||:.||||:|||..:|
 Frog    68 IFEVVNHKEVLLGE-KPQLQERGPYVYREYKKKQNITFNENGTVSFVEFRTFHFDPEKSNGKEED 131

  Fly   135 MVTAAHAITATVADEMRDQRKIVKKIINFMLNHEGGKLYVTKPVGEWIFEGYQDNITDFLNLFNT 199
            .|...:.:....:..::|....:|.||:...:....:.::.|.|.: |..||:|...||||.|..
 Frog   132 HVIVPNILVLGSSVMLQDLGIAIKWIISGAFSAFNEEAFINKTVKD-ILWGYEDPFLDFLNTFLP 195

  Fly   200 TKIDIPYK-RFGWLADRNESLTYDGLFTIHTGTDDISNLGRLTHWNGKSETGFYEM-PCGIVNGT 262
            .|  :|:| :||:.:|.|.|.|  |:||::||.:|||.:..:.:|||..:..|:.. ...::|||
 Frog   196 GK--LPFKGKFGFFSDFNNSNT--GVFTVNTGMEDISRVQMVDNWNGLKKVDFWNSEQTNMINGT 256

  Fly   263 TGDMFPPKMNVNDEITIFATDACRFMNLRPRGTYEN----HGLTATKWVGTEETLDSGENYPNQA 323
            .|.|:||....::.:..::.||||.|.|    .||.    .|:...::........:|.:||...
 Frog   257 AGQMWPPFRKPSEPLEFYSPDACRSMKL----VYEKEEKFRGIPTFRYTAPNYLFANGSDYPPNE 317

  Fly   324 CFCDEARFDECPKTGVVECKACRDKAPIYSSFPHFYLADQSYVDAVSGMKPEKEKHEFFLAVEPI 388
            .||      .|..:||....|||..||::.||||||.||..::::|.|:.|.:|.|..||.:.|:
 Frog   318 GFC------PCVASGVQNVSACRFNAPLFLSFPHFYNADPGFLESVEGLHPTEELHSLFLDMHPL 376

  Fly   389 TGVPVQVHGRIQINMMIEPDDDFDIYRGVQKVLMPMFWFDQYAELSSELASKAKLAINLSSYGII 453
            ||:|:....::|:||:.:..........::.|::|:.||.:...|...:.:        :.|.|:
 Frog   377 TGIPMNCSIKMQLNMLTKSVSGIMQTGQIKPVILPVLWFAESGHLDGPVYN--------TYYNIL 433

  Fly   454 ---------FGYSMIAFASVFLITGITLTVTKK------WVRRTPEDE 486
                     ..|.:|.....|:...:.|...|:      |......||
 Frog   434 ILMPIVLEYLQYVLIGIGLCFITVALVLPFVKQGKCFLFWNSNKNVDE 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crqNP_001245823.1 CD36 19..470 CDD:307331 145/466 (31%)
scarb1XP_002935333.1 CD36 28..461 CDD:366481 141/456 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 248 1.000 Domainoid score I2091
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H21132
Inparanoid 1 1.050 251 1.000 Inparanoid score I3140
OMA 1 1.010 - - QHG45589
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11923
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X155
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.080

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