DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment crq and cd36

DIOPT Version :9

Sequence 1:NP_001245823.1 Gene:crq / 33219 FlyBaseID:FBgn0015924 Length:491 Species:Drosophila melanogaster
Sequence 2:NP_001107151.1 Gene:cd36 / 100135002 XenbaseID:XB-GENE-493679 Length:470 Species:Xenopus tropicalis


Alignment Length:503 Identity:149/503 - (29%)
Similarity:251/503 - (49%) Gaps:61/503 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MCCKCCGETQRKVWVFGLGSVF-LLLGILIVVFWPGIADNLVEDGLT----LKPGTDAYESWLEA 60
            |||      ..|.|:. :|||. .||.||..:.:| :.|.::...::    ::.||.|||:|:||
 Frog     1 MCC------STKCWLI-VGSVIGGLLAILGGILFP-VGDMIINKEISTEAVIEEGTIAYENWIEA 57

  Fly    61 PIPIYLSFYMFNWTNPEDIRNPDIKPNFVEMGPYTFLEKH-KKENYTFYDNATVAYYERRTWFFD 124
            ..|:|..|::::.|||::|.|.. ||...:.||||:..:: .|||.|..:|.||:|::.....|.
 Frog    58 GSPVYRHFWIYHVTNPDEIINGG-KPILQQKGPYTYRVRYLPKENITQLENNTVSYWQPNGAIFQ 121

  Fly   125 PERSNGTLDDMVTAAH-AITATVADEMRDQRKIVKKIINFMLNHEGGKLYVTKPVGEWIFEGYQD 188
            .|.|.|..:|..|..: |:.|..|     ....::.::|.::......|:..:.|.|.:: ||:|
 Frog   122 REGSYGPEEDTYTVLNLAVAAAPA-----MFPALQGLLNAIIKSSNSSLFQVRSVKELLW-GYRD 180

  Fly   189 NITDFLNLFNTTKIDIPYKRFGWLADRNESLTYDGLFTIHTGTDDISNLG---------RLTHWN 244
               .||.......||   |..|.....|.  |.||::.::.|..|||.:.         .|.:||
 Frog   181 ---PFLEKIPIDSID---KTTGLFYPNNG--TADGIYHVYNGKGDISKVAIIDRYKEAKALPYWN 237

  Fly   245 GKSETGFYEMPCGIVNGTTGDMFPPKMNVNDEITIFATDACRFMNLRPRGTYENH----GLTATK 305
            ...        |.::|||....|||.:..:..:..|:::.||.:    .|.:|..    |:...:
 Frog   238 DDF--------CDMINGTDAASFPPSVKKDKRLYFFSSEICRSI----YGIFEKEYMVKGIKLYR 290

  Fly   306 WVGTEETLDSGENYPNQACFCDEARFD-ECPKTGVVECKACRDKAPIYSSFPHFYLADQSYVDAV 369
            :|.||:.:.|....|:..|||.:.:.. .|...||::.::|:...||:.|.|||..|....:|:|
 Frog   291 FVVTEDAMASPTKNPDNHCFCKDFQLSRNCTAAGVLDLRSCQGGKPIFLSLPHFLYASDYLLDSV 355

  Fly   370 SGMKPEKEKHEFFLAVEPITGVPVQVHGRIQINMMIEPDDDFDIYRGVQ-KVLMPMFWFDQYAEL 433
            ||:||.||:||.::.||||||..:....|:|:|:||:|.|..::...:| :::.|:.|.::.|.:
 Frog   356 SGLKPNKEEHETYIDVEPITGFTMHFAKRLQVNVMIQPTDKIEVMSKLQSELVFPVAWLNETALI 420

  Fly   434 SSELAS--KAKLAINLSSYGIIFGYSMIAFASVFLITGITLTV--TKK 477
            ..:.|:  |:|:...:....|:....:...:.|||...|||.|  :||
 Frog   421 GDDSANMFKSKVTTPMKVVEILRIVLLCVGSVVFLACSITLCVRGSKK 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crqNP_001245823.1 CD36 19..470 CDD:307331 138/474 (29%)
cd36NP_001107151.1 CD36 16..459 CDD:366481 135/470 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X155
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.