DRSC/TRiP Functional Genomics Resources

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Protein Alignment ex and Frmd1

DIOPT Version :10

Sequence 1:NP_476840.2 Gene:ex / 33218 FlyBaseID:FBgn0004583 Length:1427 Species:Drosophila melanogaster
Sequence 2:XP_063136953.1 Gene:Frmd1 / 689709 RGDID:1588779 Length:375 Species:Rattus norvegicus


Alignment Length:381 Identity:108/381 - (28%)
Similarity:162/381 - (42%) Gaps:87/381 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 REVYTQTC--LHFATQGMLDTELFGLAVLIDGEYMFADPESKLSKYGPKSWRSSHTHGLDANGRP 114
            ::::.|.|  .|     :.:..||||:||.:.||:|.|.:.|||||..|.|::. ||..|...|.
  Rat    41 QDLFQQVCDMAH-----IREAHLFGLSVLRENEYVFVDLKQKLSKYFSKDWKTD-THKGDKRPRA 99

  Fly   115 LLELHFRVQFYIESPFMLKDETSRHNYYLQLRHNILQRDLPREQAEQALVFLAGLALQADLGDAP 179
            .....||||||:|:...::|:|:.|.||..|:..:|:....|.  |:|...||...||||||:  
  Rat   100 PFIAFFRVQFYVENGKAIRDKTALHLYYCHLKEQVLRSRCMRR--EEAYFLLAAYGLQADLGN-- 160

  Fly   180 PGTSNSKDDSGEETSASPSNGGRGLSATTTLPK--ISKRANERMLRLSTYVASTSKRETIPLPPS 242
                       ::.|.   :.||........|:  |:||..:.:||                   
  Rat   161 -----------QQESV---HVGRYFEPHAYFPQWIINKRGIDYILR------------------- 192

  Fly   243 LPPNGADYYRIEDYLPSGLHTPWARSAMRACHREHLGMATAEAELLYIQQACSLHETINAHTYRM 307
                               |.|       |.|||..|:...||...:|:.||.| |.:.||.:||
  Rat   193 -------------------HVP-------AMHREQQGLTAKEAIRRFIRDACQL-EDVPAHFFRM 230

  Fly   308 RLAKSEQGSGSAWFVVYAKGIKILGGESTNSSSNPE-TTTFLWPNITKLSFERKKFEIRS----G 367
            ...|.|..| :....:..||:.|.    ......|: ...|.|..|:|::|..||.||:.    .
  Rat   231 YKEKKEDES-TVLLGLTLKGVTIY----QEVDYTPQLLCDFPWSRISKVTFLGKKLEIQPEGLLA 290

  Fly   368 ESRITLYAASDEKNKLLLTLCKDTHQWSMKLAARLKEVSKREEEEAAESQRLHASY 423
            ..::.||.....:::.||.|.:.|||..:.|...|:.:.:.||   ||.:....||
  Rat   291 TQKLLLYTGHAWRSRYLLQLLRSTHQLHLSLKPVLQWLQQLEE---AEKKSYRESY 343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
exNP_476840.2 FERM_F1_PTPN13_like 25..128 CDD:340621 30/77 (39%)
B41 27..297 CDD:214604 70/248 (28%)
FERM_C_FRMD1_FRMD6 298..405 CDD:270006 31/111 (28%)
PHA03255 512..>681 CDD:165513
Frmd1XP_063136953.1 None
Blue background indicates that the domain is not in the aligned region.

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