DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RpLP1 and RpLP0

DIOPT Version :9

Sequence 1:NP_001259822.1 Gene:RpLP1 / 33214 FlyBaseID:FBgn0002593 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_001262202.1 Gene:RpLP0 / 40451 FlyBaseID:FBgn0000100 Length:317 Species:Drosophila melanogaster


Alignment Length:117 Identity:45/117 - (38%)
Similarity:58/117 - (49%) Gaps:28/117 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 AELACV-----YASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIG 64
            |.||.|     |.::......:| .|.| |.:..||..|||         ..|...:|:.|.:  
  Fly   220 ANLAAVCLSVGYPTIASAPHSIA-NGFK-NLLAIAATTEVE---------FKEATTIKEYIKD-- 271

  Fly    65 SGVGAAPAGGAAPAAAAAAPAA----ESKKEEKKKEEESDQSDDDMGFGLFD 112
                  |:..||.|:|:|||||    |.|:|.||.|.||::.||||||||||
  Fly   272 ------PSKFAAAASASAAPAAGGATEKKEEAKKPESESEEEDDDMGFGLFD 317

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpLP1NP_001259822.1 Ribosomal_P1 6..111 CDD:100109 41/113 (36%)
RpLP0NP_001262202.1 PTZ00135 1..275 CDD:240285 18/73 (25%)
Ribosomal_P0_L10e 8..182 CDD:240221
Ribosomal_60s 232..>285 CDD:278836 18/71 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467275
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.