DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ebi and tup12

DIOPT Version :9

Sequence 1:NP_477329.1 Gene:ebi / 33212 FlyBaseID:FBgn0263933 Length:700 Species:Drosophila melanogaster
Sequence 2:NP_592910.2 Gene:tup12 / 2543402 PomBaseID:SPAC630.14c Length:598 Species:Schizosaccharomyces pombe


Alignment Length:497 Identity:120/497 - (24%)
Similarity:198/497 - (39%) Gaps:106/497 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   202 APGASQKKSQNSNEAGSSSSGNAGNANATSTDDAASSTSTNGNSS--TSSSVEQPTSGLTPAGGT 264
            |.|...:.|:..:...|.|.|..|||...::|:::.....|..||  |..::..|.   ..:.||
pombe   119 ASGVVPQSSKTKHGRNSVSFGKYGNAGPFNSDNSSKPLILNNGSSGGTPKNLRSPA---IDSDGT 180

  Fly   265 V----STSNPDAAASGGAS---------TATGSKAPSGAVTIRVGAQGNNVQSGSSNAQSSAPSG 316
            |    .|||.|..:...:|         |..||...:....:.:|.......|.:|:....|...
pombe   181 VLAPIQTSNVDLGSQYYSSPHVRPAVGATMAGSAMRTFPSNLPLGHPPPPSDSANSSVTPIAAPL 245

  Fly   317 TISSSTSGGAGTPAALVPMD-----------IDENI--EIPESKARVLRGHESEVFICAWNPSRD 368
            .::...||....||.::|..           :..|:  :.|....::|...|....||....|.|
pombe   246 VVNGKVSGNPPYPAEIIPTSNVPNREEKDWTVTSNVPNKEPPISVQLLHTLEHTSVICYVRFSAD 310

  Fly   369 --LLASGSGDSTARIWDMSDANTNSNQLVLRHCIQKGGAEVPSNKDVTSLDWNCDGSLLATGSYD 431
              .||:|. :..|.::     |..:.:|:.  .:|:..::...:..|.|:.::.||..||||..|
pombe   311 GKFLATGC-NRAAMVF-----NVETGKLIT--LLQEESSKREGDLYVRSVAFSPDGKYLATGVED 367

  Fly   432 GYARIWK-TDGRLASTLGQHKGPIFALKWNKCGNYILSAGVDKTTIIWDASTGQCTQQFAFHSAP 495
            ...|||. ...|:...|..|:..|::|.::|.|..::|...|:|..:||...|:  |:...|   
pombe   368 QQIRIWDIAQKRVYRLLTGHEQEIYSLDFSKDGKTLVSGSGDRTVCLWDVEAGE--QKLILH--- 427

  Fly   496 ALDVDWQTNQAFASCSTDQRIHVCRLGVNEPIKTFKGHTNEVNAIKWCPQGQLLASCSDDMTLKI 560
                            ||                     :.|..:.:.|.||.:|:.|.|..::|
pombe   428 ----------------TD---------------------DGVTTVMFSPDGQFIAAGSLDKVIRI 455

  Fly   561 WSMNRDRCCHDLQAHSKEIYTIKWSPTGPGTNNPNTNLILASASFDSTVRLWDV----------- 614
            |: :.......|..|.:.:|::.:||.|.         .|.|.|.|:|::||::           
pombe   456 WT-SSGTLVEQLHGHEESVYSVAFSPDGK---------YLVSGSLDNTIKLWELQCVSNVAPSMY 510

  Fly   615 -ERGSCIHTLTKHTEPVYSVAFSPDGKHLASGSFDKCVHIWS 655
             |.|.|..|.|.|.:.:.||..|||||.:.|||.|:.:..||
pombe   511 KEGGICKQTFTGHKDFILSVTVSPDGKWIISGSKDRTIQFWS 552

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ebiNP_477329.1 LisH 6..32 CDD:285685
WD40 349..655 CDD:238121 81/320 (25%)
WD40 repeat 358..402 CDD:293791 10/45 (22%)
WD40 repeat 414..449 CDD:293791 13/35 (37%)
WD40 repeat 454..490 CDD:293791 11/35 (31%)
eIF2A 457..665 CDD:285825 54/211 (26%)
WD40 repeat 497..531 CDD:293791 2/33 (6%)
WD40 repeat 537..573 CDD:293791 9/35 (26%)
WD40 repeat 579..624 CDD:293791 15/56 (27%)
WD40 repeat 630..654 CDD:293791 11/23 (48%)
tup12NP_592910.2 Tup_N 37..115 CDD:285748
WD40 <284..598 CDD:225201 84/329 (26%)
WD40 292..594 CDD:238121 83/321 (26%)
WD40 repeat 302..338 CDD:293791 10/43 (23%)
WD40 repeat 350..386 CDD:293791 13/35 (37%)
WD40 repeat 391..426 CDD:293791 11/36 (31%)
WD40 repeat 433..467 CDD:293791 8/34 (24%)
WD40 repeat 473..521 CDD:293791 15/56 (27%)
WD40 repeat 527..563 CDD:293791 13/26 (50%)
WD40 repeat 569..593 CDD:293791
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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