DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AP-2alpha and AT1G23935

DIOPT Version :10

Sequence 1:NP_995607.1 Gene:AP-2alpha / 33211 FlyBaseID:FBgn0264855 Length:952 Species:Drosophila melanogaster
Sequence 2:NP_001319071.1 Gene:AT1G23935 / 2745761 AraportID:AT1G23935 Length:1282 Species:Arabidopsis thaliana


Alignment Length:248 Identity:73/248 - (29%)
Similarity:120/248 - (48%) Gaps:22/248 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 CKSKEAEVKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNK 98
            |::...|...:.||.||||:....|   |.:.:.:.:.||:.|.:||:...|..||.:.|::|..
plant   931 CQTAAEERAVVRKECANIRALINED---DPHDRHRNLAKLMLIHMLGYPTHFVQMECLKLIASPG 992

  Fly    99 YSEKQIGYLFISVLVNTNSDLIRLIIQSIKNDLQSRNPVHVNLALQCIANIGSRDMAESFSNEIP 163
            :.||:||||.:         ::.|:.:|:|.||...|...|.|||..:.||.|.:||...:.|:.
plant   993 FPEKRIGYLGL---------MLMLVTKSLKQDLNHSNQYVVGLALFALGNICSAEMAPDLAPEVE 1048

  Fly   164 KLLVSGDTMDVVKQSAALCLLRLFRSSPDIIPGGEWTSRIIHLLNDQHMGVVTAATSLIDALVKR 228
            :|:...|..  :::.||||..|:.|..||::.  .:.:....||.::|.||:.....|...|...
plant  1049 RLVQFRDPN--IRKKAALCSTRIVRKVPDLVE--NFVNADASLLKEKHHGVLIRGVQLCYELCTI 1109

  Fly   229 NPD--EY--KGCVNLAVSRLSRIVTASYTDLQDYTYYFVPAPWLSVKLLRLLQ 277
            |.:  ||  ..|....:..|..|...:|.  .:|....:..|:|..:|||.|:
plant  1110 NDEALEYFRTKCTEGLIKFLRDITNCAYQ--PEYDVAGITDPFLQRRLLRFLR 1160

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AP-2alphaNP_995607.1 Adaptin_N 40..603 CDD:396262 72/242 (30%)
Alpha_adaptinC2 730..839 CDD:197886
Alpha_adaptin_C 839..947 CDD:426707
AT1G23935NP_001319071.1 API5 27..372 CDD:428672
Peptidase_C1 461..678 CDD:239110
Adaptin_N 937..>1140 CDD:396262 65/220 (30%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.