Sequence 1: | NP_476708.1 | Gene: | RpI135 / 33210 | FlyBaseID: | FBgn0003278 | Length: | 1129 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001358898.1 | Gene: | POLR1B / 84172 | HGNCID: | 20454 | Length: | 1181 | Species: | Homo sapiens |
Alignment Length: | 1184 | Identity: | 516/1184 - (43%) |
---|---|---|---|
Similarity: | 721/1184 - (60%) | Gaps: | 95/1184 - (8%) |
- Green bases have known domain annotations that are detailed below.
Fly 17 SRPEFKQ-------IPKKLSR-HLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISM 73
Fly 74 KVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMDLGEVPI 138
Fly 139 MLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQN 203
Fly 204 FSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLV 268
Fly 269 QGYESDQYYVSCVQAMLREVQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDDDVTDFILRERVM 333
Fly 334 IHLDTYEDKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRR 398
Fly 399 CLQKKLTSPDALVTSAVMTQCMRQAGGVGRAIESFLATGNIASRTGLGLMQNSGLVIMAENINRM 463
Fly 464 RYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKL 528
Fly 529 VKAIPKHLIDMGMMPLS---NRRYLGEKLYVVFLDGKHLGHIHQSEAEKIVDELRYGK------- 583
Fly 584 ------------------------------IFGT-----------LPQMMEIGFIPFK-KNGQFP 606
Fly 607 GLYIATGPARMMRPVWNLKWKRVEYIGTLEQLYMEIAIDAKEMYPDFTTHLELAKTHFMSNLANL 671
Fly 672 IPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDFAMG 736
Fly 737 TNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTLDKK------SSYFARHPHMPEL 795
Fly 796 IKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKMDEKEDCIVESIRQLGSFDLSPK-KMVA 859
Fly 860 ITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETM 924
Fly 925 AGKGAAIHGNVYDATPFRFSEENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVH 989
Fly 990 YQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSD 1054
Fly 1055 KTHTLVCHKCGSILAPLQRIVKRNETGGLSSQPDT----------CRLCGDNSSVSMIEIPFSFK 1109
Fly 1110 YLVTELSSVNINAR 1123 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpI135 | NP_476708.1 | RpoB | 34..1128 | CDD:223163 | 510/1159 (44%) |
RNA_pol_B_RPB2 | 35..1125 | CDD:238353 | 510/1158 (44%) | ||
RNA_pol_Rpa2_4 | 564..614 | CDD:284335 | 19/98 (19%) | ||
POLR1B | NP_001358898.1 | RNA_pol_B_RPB2 | 38..1179 | CDD:238353 | 510/1158 (44%) |
RNA_pol_Rpb2_2 | 186..375 | CDD:367992 | 66/189 (35%) | ||
RNA_pol_Rpa2_4 | 563..662 | CDD:369122 | 19/98 (19%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C165147096 | |
Domainoid | 1 | 1.000 | 447 | 1.000 | Domainoid score | I522 |
eggNOG | 1 | 0.900 | - | - | E1_COG0085 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H7133 | |
Inparanoid | 1 | 1.050 | 982 | 1.000 | Inparanoid score | I311 |
Isobase | 1 | 0.950 | - | 0 | Normalized mean entropy | S774 |
OMA | 1 | 1.010 | - | - | QHG53969 | |
OrthoDB | 1 | 1.010 | - | - | D42570at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000346 | |
OrthoInspector | 1 | 1.000 | - | - | oto90774 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_102249 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR20856 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 1 | 1.000 | - | - | X3081 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
16 | 15.720 |