Protein Alignment RpI135 and NRPA2

DIOPT Version :9

• Sequence 1: NP_476708.1
• Gene: RpI135 / 33210
• FlyBaseID: FBgn0003278
• Length: 1129
• Species: Drosophila melanogaster
• Sequence 2: NP_564341.2
• Gene: NRPA2 / 839872
• AraportID: AT1G29940
• Length: 1178
• Species: Arabidopsis thaliana
• Alignment Length: 1205
• Identity: 465/1205 - (38%)
• Similarity: 672/1205 - (55%)
• Gaps: 127/1205 - (10%)

  Fly    10 TIPVLTNSRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISMK 74
            |:|.:    .:||:        |.||...|::|||.|...|||.....:.|.....|..|    .
plant     9 TVPTM----EDFKE--------LHNLVTHHIESFDYMTLKGLDVMFNRIKPVSVYDPNTE----N 57

  Fly    75 VESIWIAKPKV--PQD---VIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMDLG 134
            ..|||:..|.|  ||.   ....|...:.|.:.||..:||:|.....:.:..|.........|.|
plant    58 ELSIWLENPLVFAPQKESFKSTSRKEPLLPFECRQAKISYTGTFMADVCFKYNDGVVVRDKFDFG 122

  Fly   135 EVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKD 199
            :.||||.||.|:|..|...:::|..|..||.||.|::.|.|::.|.:|..:||||..:.|:|::|
plant   123 QFPIMLMSKLCSLKGADCRKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRD 187

  Fly   200 RGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIY 264
            |.:.:|...::.:.||:|:||::..::||.||:|:..|..|.|...:||.|:||.|.:..|||||
plant   188 RKEGYSSKAVVTRCVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTNSCDEEIY 252

  Fly   265 NRL----------VQGYESDQYYVSCVQAMLREVQNENVYTHAQCKSFIGNLFRARFPEVPEWQP 319
            ..|          ..|....|......:.:|.||::..::|..||:..:|..|          ||
plant   253 ESLNCCYSEHYGRGDGAIGTQLVRERAKIILDEVRDLGLFTREQCRKHLGQHF----------QP 307

  Fly   320 DDD---------VTDFILRERVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVL 375
            ..|         |.:.:||:.:.:|||...|||.|::|:||||:.........:|.||...||:|
plant   308 VLDGVKKESLSIVAEAVLRDYLFVHLDNDHDKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEIL 372

  Fly   376 LPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQAG-----GVGRAIESFLA 435
            :|||:...||.|::|.|:.:.:..|:.:|.:.::..:...:....:...     .:|.:||:.|.
plant   373 VPGHVITIYLKEKLEEWLRKCKSLLKDELDNTNSKFSFESLADVKKLINKNPPRSIGTSIETLLK 437

  Fly   436 TGNIASRTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPV 500
            ||.:.:::||.|.|.:|..:.||.:|.:|::|.|||:|||:.|..:|||..|:|||::|||:|||
plant   438 TGALKTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTTVRKLLPESWGFLCPV 502

  Fly   501 HTPDGTPCGLLNHLTLTCEISMRPDP--------KLVKAIPKHLIDMGMMPLSNR--RYLGEKLY 555
            |||||||||||||:|.|..|:.:.|.        |:.|::...|...||:|...:  |....|:.
plant   503 HTPDGTPCGLLNHMTRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGMVPSLPKLVRAGPPKVI 567

  Fly   556 VVFLDGKHLGHIHQSEAEKIVDELRYGKIF--GTLPQMMEIGFIPFKKNGQFPGLYIATGPARMM 618
            .|.|||:.:|.:..:...|:|..:|..|:.  ..:|:.:|:|::|....|.:||||:|:.|||.:
plant   568 HVLLDGQVVGTLSSNLVTKVVSYIRRLKVEAPSVIPEDLEVGYVPTSMGGSYPGLYLASCPARFI 632

  Fly   619 RPVWNLK--WKRVEYIGTLEQLYMEIAIDAKEMYPD----------FTTHLELAKTHFMSNLANL 671
            |||.|:.  ...:|.||..||::|||:.      ||          ..||.|:..|..:|.:|||
plant   633 RPVKNISIPSDNIELIGPFEQVFMEISC------PDGGNGGRNNSSLATHEEIHPTGMISVVANL 691

  Fly   672 IPMPDYNQSPRNMYQCQMGKQTM--GTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDFA 734
            .|..|:||||||||||||.||||  .|..|.:  :|..|:|.||||.:|:.|...|....:|:..
plant   692 TPWSDHNQSPRNMYQCQMAKQTMAYSTQALQF--RADQKIYHLQTPQSPVVRTKTYTTYSIDENP 754

  Fly   735 MGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTL-------DKKSSYFARHPHM 792
            .||||||||:::||:|||||||:||::.|||..:|.||:|:.:.|       |..|..|.|..:.
plant   755 TGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQTENIDLSDQNSRFDSGSKSFRRSTNK 819

  Fly   793 PELIKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKMDEK--EDCIVESIRQLGSFDLSPK 855
            .|..: :|.||||..|.|| |....||....|| |.|...|..|  :..||:.:    |.|:..|
plant   820 AEHFR-IDADGLPSVGQKL-YPDEPYCSIYDEV-TNKTRHMKRKGTDPVIVDFV----SVDMKSK 877

  Fly   856 K---MVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFT-ESGLIPDIVFNPHGFPSRMT 916
            |   ...|..|..|...|||||:||.||||:|||.:|..|:||. .:|:.||::.|||.||||||
plant   878 KHPQRANIRFRHARNPIIGDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMT 942

  Fly   917 IAMMIETMAGKGAAIHGNVYDATPFR----------FSEENTAIDYFGKMLEAGGYNYYGTERLY 971
            |||::|::|.||.::||...||||||          .|:.:..:|..|.||:..|:|:||||.||
plant   943 IAMLLESIAAKGGSLHGKFVDATPFRDAVKKTNGEEESKSSLLVDDLGSMLKEKGFNHYGTETLY 1007

  Fly   972 SGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDAL 1036
            ||..|.|:..:||.|.|:||||||||.||:||||||.|:..|||||||||||||:||||||||:|
plant  1008 SGYLGVELKCEIFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSL 1072

  Fly  1037 ISHGAAFLLQDRLFHNSDKTHTLVCHKCGSILAP----LQRIVKRNETG----GLSSQPDTCRLC 1093
            ::|||::||.|||..:||.....||..|||:|..    :|:.....|.|    |.:.:..||..|
plant  1073 LAHGASYLLHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKVTCYSC 1137

  Fly  1094 GDNSSVSMIEIPFSFKYLVTELSSVNINARFKLNE 1128
            ..:..:..:.:|:.|:||..||:|:||....:|::
plant  1138 KTSKGMETVAMPYVFRYLAAELASMNIKMTLQLSD 1172

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RpI135	NP_476708.1	RpoB	34..1128	CDD:223163	460/1179 (39%)
		RNA_pol_B_RPB2	35..1125	CDD:238353	458/1175 (39%)
		RNA_pol_Rpa2_4	564..614	CDD:284335	15/51 (29%)
NRPA2	NP_564341.2	RpoB	13..1174	CDD:223163	463/1201 (39%)
		RNA_pol_B_RPB2	22..1169	CDD:238353	458/1175 (39%)
		RNA_pol_Rpb2_2	202..372	CDD:282427	58/179 (32%)
		RNA_pol_Rpa2_4	576..628	CDD:284335	15/51 (29%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	317	1.000	Domainoid score	I292
eggNOG	1	0.900	-	-		E1_COG0085
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H7133
Inparanoid	1	1.050	754	1.000	Inparanoid score	I105
OMA	1	1.010	-	-		QHG53969
OrthoDB	1	1.010	-	-		D42570at2759
OrthoFinder	1	1.000	-	-		FOG0000346
OrthoInspector	1	1.000	-	-		oto4228
orthoMCL	1	0.900	-	-		OOG6_102249
Panther	1	1.100	-	-	LDO	PTHR20856
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X3081
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	14	13.840