Protein Alignment RpI135 and NRPC2

DIOPT Version :9

• Sequence 1: NP_476708.1
• Gene: RpI135 / 33210
• FlyBaseID: FBgn0003278
• Length: 1129
• Species: Drosophila melanogaster
• Sequence 2: NP_001332060.1
• Gene: NRPC2 / 834550
• AraportID: AT5G45140
• Length: 1161
• Species: Arabidopsis thaliana
• Alignment Length: 1207
• Identity: 323/1207 - (26%)
• Similarity: 534/1207 - (44%)
• Gaps: 164/1207 - (13%)

  Fly    14 LTNSRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISMKVE-S 77
            :.::..:|:.:|:.|.  :..|...|:|||:..:.||:          |.:..|..:|:..|: |
plant    26 IKSTADKFQLVPEFLK--VRGLVKQHLDSFNYFINVGI----------HKIVKANSRITSTVDPS 78

  Fly    78 IWIAKPKV---PQDVIDVRTRE-IYPTDSRQLHVSYSGMCSVRL----GWSVNGVQKTPINMDLG 134
            |::...||   ...:|:|.|.| |.|...|...::|:....|.:    |...|..:....|:.:|
plant    79 IYLRFKKVRVGEPSIINVNTVENINPHMCRLADMTYAAPIFVNIEYVHGSHGNKAKSAKDNVIIG 143

  Fly   135 EVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKD 199
            .:||||||..|.|.....||:.:.||...:.||.|:|:|.||::.:.....:|..|.   .|.|.
plant   144 RMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIII---DSDKK 205

  Fly   200 RGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIY 264
            ...|.|.......|..:....:.....||      |:...||:   :|:.::||.:...:|:||
plant   206 GNINASVTSSTEMTKSKTVIQMEKEKIYL------FLHRFVKK---IPIIIVLKAMGMESDQEI- 260

  Fly   265 NRLVQGYESDQYYVSCVQAMLREVQNENVYTHAQCKSFI-GNLFRARFPEVPEWQPDDDVTDFIL 328
               ||....|..:.:.:...:.|..:|.|.|..|...:: ..:.:..:...||   .|.....||
plant   261 ---VQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKISYGTPPE---KDGRALSIL 319

  Fly   329 RERVMIHLDTYEDKFQLIVF----MIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSERV 389
            |:..:.|:...::.|:...|    |::::.:....|..:::.|....:.:.|.|.|......:..
plant   320 RDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLF 384

  Fly   390 ESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQAG--GVGRAIESFLATGNIASRTGLGLMQNSG 452
            ::.:|:..:.:...|..| ...:....:||:.:..  .:...:|..|:|||...:.  ..|...|
plant   385 KTMLSEAIKNVDHILNKP-IRASRFDFSQCLNKDSRYSISLGLERTLSTGNFDIKR--FRMHRKG 446

  Fly   453 LVIMAENINRMRYMSHFRAIHRGS--YFTTMRTTEARQLLPDAWGFICPVHTPDGTPCGLLNHLT 515
               |.:.:.|:.::.....|.:.|  :..:.:.:..|.|.|..||.:||..||:|..|||:.:|.
plant   447 ---MTQVLTRLSFIGSMGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLA 508

  Fly   516 LTCEISMRPD--PKLVKAIPKHLIDMGMMPLSNRRYLGEKL-----YVVFLDGKHLGHIHQSEAE 573
            |...::...:  |.:.......:.|:.::.       .|:|     ::|.|:|..||  ..|..:
plant   509 LMTHVTTDEEEGPLVAMCYKLGVTDLEVLS-------AEELHTPDSFLVILNGLILG--KHSRPQ 564

  Fly   574 KIVDELRYGKIFGTLPQMMEIG-FIPFKKNGQFPGLYIATGPARMMRPVWNLKWKRVEYIGTLEQ 637
            ...:.||      .|.:..:|| |:....|.:...:|:|:...|:.||:....    :.|..::|
plant   565 YFANSLR------RLRRAGKIGEFVSVFTNEKQHCVYVASDVGRVCRPLVIAD----KGISRVKQ 619

  Fly   638 LYMEIAIDAKEMYPDF----------------------------------------TTHLELAKT 662
            .:|:...|....:.||                                        |||:|:...
plant   620 HHMKELQDGVRTFDDFIRDGLIEYLDVNEENNALIALYESDGTTELDEGAEAAKADTTHIEIEPF 684

  Fly   663 HFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDN 727
            ..:..:|.|||.|.:||||||.|||.||||.||....|...:....||.|..|..||......:.
plant   685 TILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIEL 749

  Fly   728 IQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTLDKKSSYFARHPHM 792
            :..|....|.||.|||:|::|||:|||:::||::.:|||....:.|.......|..:..|....:
plant   750 VGYDKLGAGQNATVAVMSFSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVAMSQKYDNCTADRILI 814

  Fly   793 P-------ELIKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKM----------------- 833
            |       |.::.||.|||..||..:   .|...|.:.:|....|.|.
plant   815 PQRTGPDAEKMQILDDDGLATPGEII---RPNDIYINKQVPVDTVTKFTSALSDSQYRPAREYFK 876

  Fly   834 -DEKEDCIVESIRQLGSFDLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTE 897
             .|.|..:|:.:....  |...:..:...:|..|...:||||:||.||||:|......||.||:|
plant   877 GPEGETQVVDRVALCS--DKKGQLCIKYIIRHTRRPELGDKFSSRHGQKGVCGIIIQQEDFPFSE 939

  Fly   898 SGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPF-RFSEENTAIDYFGKMLEAGG 961
            .|:.||::.||||||||||:..|||.:..|.....|..:..:.| ..|.....::.....|...|
plant   940 LGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGERSGHADKVETISATLVEKG 1004

  Fly   962 YNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGV 1026
            ::|.|.:.||||:.|..:.|.||.|.::||:|:|||.||...|.:|.....|.||.:|:.:.||:
plant  1005 FSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGL 1069

  Fly  1027 RFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGSILAPLQRIVKRNETGGLSSQPDTCR 1091
            |.||||||.||::||:.|:.:||..:||.....||..|| :|......:|:          ..|.
plant  1070 RVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRACG-LLGYYNYKLKK----------AVCT 1123

  Fly  1092 LCGDNSSVSMIEIPFSFKYLVTELSSVNINARFKLNE 1128
            .|.:..:::.:::|::.|.|..||.|:|:..|.||.|
plant  1124 TCKNGDNIATMKLPYACKLLFQELQSMNVVPRLKLTE 1160

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RpI135	NP_476708.1	RpoB	34..1128	CDD:223163	319/1185 (27%)
		RNA_pol_B_RPB2	35..1125	CDD:238353	317/1181 (27%)
		RNA_pol_Rpa2_4	564..614	CDD:284335	12/50 (24%)
NRPC2	NP_001332060.1	RNA_pol_B_RPB2	45..1157	CDD:238353	317/1181 (27%)
		RNA_pol_Rpb2_4	550..611	CDD:398322	18/68 (26%)
		RNA_pol_Rpb2_5	632..683	CDD:398323	6/50 (12%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0085
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D42570at2759
OrthoFinder	1	1.000	-	-		FOG0000346
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	5	4.820