Sequence 1: | NP_476708.1 | Gene: | RpI135 / 33210 | FlyBaseID: | FBgn0003278 | Length: | 1129 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_595819.2 | Gene: | rpa2 / 2541280 | PomBaseID: | SPBP23A10.07 | Length: | 1174 | Species: | Schizosaccharomyces pombe |
Alignment Length: | 1186 | Identity: | 494/1186 - (41%) |
---|---|---|---|
Similarity: | 703/1186 - (59%) | Gaps: | 91/1186 - (7%) |
- Green bases have known domain annotations that are detailed below.
Fly 2 LEEMQQMKTIPVLTNSRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWLSP 66
Fly 67 A-----------GEKISMKVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWS 120
Fly 121 VNGVQKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTR 185
Fly 186 RNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLSYVPVCL 250
Fly 251 ILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQAMLREVQNENVYTHAQCKSFIGNLFRARFPEVP 315
Fly 316 EWQPDDDVTDFILRERVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHL 380
Fly 381 YQKYLSERVESWVSQVRR--CLQKKLTSP-----DALVTSAVMTQCMRQAGGVGRAIESFLATGN 438
Fly 439 IASRTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTP 503
Fly 504 DGTPCGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMGMMPLSNRRYLGEK--LYVVFLDGKHLGH 566
Fly 567 IHQSEAEKIVDELRYGKI-------FGT------LPQMMEIGFIPFKKNGQFPGLYIATGPARMM 618
Fly 619 RPVWNLKWKRVEYIGTLEQLYMEIAIDAKEMYPDFTTHLELAKTHFMSNLANLIPMPDYNQSPRN 683
Fly 684 MYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDFAMGTNAIVAVISYTG 748
Fly 749 YDMEDAMIINKAAYERGFAYGSIYKTKFLTLDKKS-------SYFARHPHMP---ELIKHLDTDG 803
Fly 804 LPHPGSKLSYGSPLYCYFDGEVATYKVVKMDEKEDCIVESIRQLGSFDL--SPKKMVAITLRVPR 866
Fly 867 PATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAI 931
Fly 932 HGNVYDATPFRFSEENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHM 996
Fly 997 VFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVC 1061
Fly 1062 HKCGSILAPLQRIVKRNETGGLSSQPDTCRLCG-------DNSSV---------------SMIEI 1104
Fly 1105 PFSFKYLVTELSSVNI 1120 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpI135 | NP_476708.1 | RpoB | 34..1128 | CDD:223163 | 487/1154 (42%) |
RNA_pol_B_RPB2 | 35..1125 | CDD:238353 | 487/1153 (42%) | ||
RNA_pol_Rpa2_4 | 564..614 | CDD:284335 | 21/62 (34%) | ||
rpa2 | NP_595819.2 | RpoB | 10..1174 | CDD:223163 | 492/1182 (42%) |
RNA_pol_B_RPB2 | 29..1172 | CDD:238353 | 488/1163 (42%) | ||
RNA_pol_Rpb2_2 | 190..378 | CDD:282427 | 67/188 (36%) | ||
RNA_pol_Rpa2_4 | 568..631 | CDD:284335 | 21/62 (34%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Domainoid | 1 | 1.000 | 383 | 1.000 | Domainoid score | I127 |
eggNOG | 1 | 0.900 | - | - | E1_COG0085 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H7133 | |
Inparanoid | 1 | 1.050 | 883 | 1.000 | Inparanoid score | I50 |
OMA | 1 | 1.010 | - | - | QHG53969 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000346 | |
OrthoInspector | 1 | 1.000 | - | - | oto101672 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_102249 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR20856 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R1173 |
SonicParanoid | 1 | 1.000 | - | - | X3081 | |
TreeFam | 1 | 0.960 | - | - | ||
14 | 13.860 |