Sequence 1: | NP_476708.1 | Gene: | RpI135 / 33210 | FlyBaseID: | FBgn0003278 | Length: | 1129 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_002940442.1 | Gene: | polr1b / 100485503 | XenbaseID: | XB-GENE-1008539 | Length: | 1135 | Species: | Xenopus tropicalis |
Alignment Length: | 1132 | Identity: | 500/1132 - (44%) |
---|---|---|---|
Similarity: | 726/1132 - (64%) | Gaps: | 59/1132 - (5%) |
- Green bases have known domain annotations that are detailed below.
Fly 29 SRH--LANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISMKVESIWIAKPKVPQDVID 91
Fly 92 VRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMDLGEVPIMLRSKACNLGQATPEEMV 156
Fly 157 KHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESSL 221
Fly 222 SNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQAMLR 286
Fly 287 EVQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDDDVTDFILRERVMIHLDTYEDKFQLIVFMIQ 351
Fly 352 KLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTSAVM 416
Fly 417 TQCMRQAGGVGRAIESFLATGNIASRTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTM 481
Fly 482 RTTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMGMMPLSN 546
Fly 547 RR-YLGEKLYVVFLDGKHLGHIHQSEAEKIVDELRYGKI--FGTLPQMMEIGFIPFK-KNGQFPG 607
Fly 608 LYIATGPARMMRPVWNLKWKRVEYIGTLEQLYMEIAIDAKEMYPDFTTHLELAKTHFMSNLANLI 672
Fly 673 PMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDFAMGT 737
Fly 738 NAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTLDKK------SSYFARHPHMPELI 796
Fly 797 KHLDTDGLPHPGSKLSYGSPLYCYFD---GE--VATYKVVKMDEKEDCIVESIR------QLGSF 850
Fly 851 DLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRM 915
Fly 916 TIAMMIETMAGKGAAIHGNVYDATPFRFSEENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMT 980
Fly 981 ADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLL 1045
Fly 1046 QDRLFHNSDKTHTLVCHKCGSILAPLQRIVKRNETGGLSSQPDT----------CRLCGDNSSVS 1100
Fly 1101 MIEIPFSFKYLVTELSSVNINARFKLN 1127 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpI135 | NP_476708.1 | RpoB | 34..1128 | CDD:223163 | 497/1125 (44%) |
RNA_pol_B_RPB2 | 35..1125 | CDD:238353 | 497/1120 (44%) | ||
RNA_pol_Rpa2_4 | 564..614 | CDD:284335 | 16/52 (31%) | ||
polr1b | XP_002940442.1 | RNA_pol_B_RPB2 | 38..1132 | CDD:238353 | 497/1119 (44%) |
RNA_pol_Rpb2_2 | 186..374 | CDD:367992 | 65/188 (35%) | ||
RNA_pol_Rpa2_4 | 563..616 | CDD:369122 | 16/52 (31%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 431 | 1.000 | Domainoid score | I585 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H7133 | |
Inparanoid | 1 | 1.050 | 969 | 1.000 | Inparanoid score | I323 |
OMA | 1 | 1.010 | - | - | QHG53969 | |
OrthoDB | 1 | 1.010 | - | - | D42570at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000346 | |
OrthoInspector | 1 | 1.000 | - | - | oto104568 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR20856 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R1173 |
SonicParanoid | 1 | 1.000 | - | - | X3081 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
12 | 12.110 |