DRSC/TRiP Functional Genomics Resources

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Protein Alignment al and Duxf3

DIOPT Version :10

Sequence 1:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster
Sequence 2:XP_030101272.1 Gene:Duxf3 / 74399 MGIID:1921649 Length:674 Species:Mus musculus


Alignment Length:400 Identity:94/400 - (23%)
Similarity:120/400 - (30%) Gaps:101/400 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 GGAPSGASGASGGTNSPVSDGNSDCEADEYAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFT 114
            |..|.|....|.|                       ||.||..||.|...|.:||.|...|...|
Mouse   100 GSRPQGRGLRSSG-----------------------RRPRTRLTSLQRRILGQAFERNPRPGFAT 141

  Fly   115 REELAMKIGLTEARIQVWFQNRRAKWR---------KQEKVGPQSHPYNPYLPGGAATMQTVVGA 170
            |||||...||.|..|.:|||||||:.|         .|:.:..|.....|..|.| ...:....:
Mouse   142 REELARDTGLPEDTIHIWFQNRRARRRHRRGRPTAQDQDLLASQGSDGAPTGPEG-REREGAQES 205

  Fly   171 ALPPNPFTHLGFQLRKPFDAQHAANLAAF---RYPHLSAAPMIPSGYFNQFQRAPPHMLPHGMAG 232
            .||.......|.....|.|      |.:|   ..|...|.|. .:|.    |.||...   |.||
Mouse   206 LLPQEEAGSTGMDTSSPSD------LPSFCRESQPFQVAQPR-GAGQ----QEAPTQA---GNAG 256

  Fly   233 MYSPSSSFQSLLANMTAVPRGTPL---GKPPALL-VGSPDLHSPNHMLAS---PPTSPASGHASQ 290
            ...|... |.|.......|...||   |.|...: .||.....|.....|   ..:||:..::..
Mouse   257 SLEPLLD-QLLDEVQVEEPAPAPLNLDGDPGGRVHEGSQKSFWPQEEAGSTGMDTSSPSDSNSFC 320

  Fly   291 HQQHPTAHPPPPQAPPQMPVGVQPAQLSPQHLVGIALTQQASSLSPTQTSPVALTLSHSPQ---- 351
            .:..| :....|....|.....|.....|..|  :.|.|....:...:..||.|....:|.    
Mouse   321 RESFP-SQVAQPCGSGQEDARTQADSTGPLEL--LLLDQLLDEVQKEEHVPVPLDWGRNPGSREH 382

  Fly   352 ------------------------------RQLPPPSHQAPPPPPRAATPPEDRRTSSIAAL--- 383
                                          |:..||....|..|.:|..|.:...|..:..|   
Mouse   383 EGSQDSLLPLEEAANSGMDTSIPSIWPTFCRESQPPQVAQPSGPGQAQAPTQGGNTDPLELLLYQ 447

  Fly   384 ---RLKAREH 390
               .::..||
Mouse   448 LLDEVQVEEH 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alNP_722629.1 Homeodomain 86..142 CDD:459649 30/64 (47%)
OAR 374..391 CDD:461067 3/22 (14%)
Duxf3XP_030101272.1 homeodomain 19..73 CDD:238039
HOX 112..162 CDD:197696 25/72 (35%)
Blue background indicates that the domain is not in the aligned region.

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