DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment al and Isx

DIOPT Version :10

Sequence 1:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster
Sequence 2:NP_001387929.1 Gene:Isx / 682968 RGDID:1592776 Length:242 Species:Rattus norvegicus


Alignment Length:296 Identity:93/296 - (31%)
Similarity:118/296 - (39%) Gaps:115/296 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 GGAPSGASGASGGTNSPVSDGNSDCEADEYAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFT 114
            ||..|..:..||   |.:.....|...:|   ::.:||.|||||:.||:||||.|..|||||:..
  Rat    49 GGGDSRQTTTSG---SKLEKPTQDQPQEE---RKNKRRVRTTFTTEQLQELEKLFHFTHYPDIHV 107

  Fly   115 REELAMKIGLTEARIQVWFQNRRAKWRKQEKVGPQSHPYNPYLPGGAATMQTVVGAALPPNPFTH 179
            |.:||.:|.|.|||:|:||||:|||||||||.|..|.|..|    |:.|                
  Rat   108 RSQLASRINLPEARVQIWFQNQRAKWRKQEKSGSLSAPQQP----GSCT---------------- 152

  Fly   180 LGFQLRKPFDAQHAANLAAFRYPHLSAAPMIPSGYFNQFQRAPPHMLPHGMAGMYSPSSSFQSLL 244
                     ||..:|::.|                            .|.|....|.|:.|:   
  Rat   153 ---------DAHCSAHIGA----------------------------THRMLPPLSDSARFK--- 177

  Fly   245 ANMTAVPRGTPLGKPPALLVGSPDLHSPNHMLASPPTSPASGHASQHQQHPTA-----HPPPPQA 304
                              ||..||  ||..|....|.:||      ...||.|     |||.|: 
  Rat   178 ------------------LVPCPD--SPCPMAPMGPAAPA------WPSHPAALCPYLHPPTPK- 215

  Fly   305 PPQMPVGVQPAQLSPQHL------VGIALTQQASSL 334
             ||  ||        |||      .|.:|.:||:.|
  Rat   216 -PQ--VG--------QHLCNANIRTGFSLPKQATLL 240

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alNP_722629.1 Homeodomain 86..142 CDD:459649 36/55 (65%)
OAR 374..391 CDD:461067
IsxNP_001387929.1 Homeodomain 79..135 CDD:459649 36/55 (65%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.