DRSC/TRiP Functional Genomics Resources

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Protein Alignment al and pitx1

DIOPT Version :10

Sequence 1:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster
Sequence 2:NP_001035436.3 Gene:pitx1 / 678598 ZFINID:ZDB-GENE-060421-3623 Length:285 Species:Danio rerio


Alignment Length:377 Identity:106/377 - (28%)
Similarity:143/377 - (37%) Gaps:142/377 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 LTVSMSVSGGAPSGASGASGGTNSPVSDGNSDCEADEY---------------APKRKQRRYRTT 91
            :.|.|:.|...|..|| ::..|....|..:||.||.|.               ..|:||||.||.
Zfish     1 MNVDMASSFHLPRSAS-STRETLENTSSESSDTEAAEKERSVEQRSDDGNADDPKKKKQRRQRTH 64

  Fly    92 FTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEKVGPQSHPYNPY 156
            |||.||:|||..|.|..|||:.||||:|:...|||||::|||:||||||||:|:........|.|
Zfish    65 FTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQMDLCKNSY 129

  Fly   157 LPGGAATMQTVVGAALPPNPFTHLGFQLRKPFDAQHAANLAAFRYPH-----LSAAPMIPSG--Y 214
            ||..:..||                     |:|..:    ..:.|.:     |:.||:....  :
Zfish   130 LPQFSGLMQ---------------------PYDDVY----PTYTYNNWTNKGLTPAPLSTKNFTF 169

  Fly   215 FNQFQRAPPHMLPHGMAGMYSPSSSFQSLLANMTAVPRGTPLGKPPALLVGSPDLHSPNHMLASP 279
            ||.       |.|.....|:|..||..|:                                    
Zfish   170 FNS-------MSPLTSQSMFSAPSSISSM------------------------------------ 191

  Fly   280 PTSPASGHASQHQQHPTAHPPPPQAPPQMP------VGVQPAQLSPQHLVGIALTQQASSLSPTQ 338
              |.|||         ..|    .|.|.||      :|         :|.||.    .|:::|  
Zfish   192 --SMASG---------MGH----SAVPGMPTTGLNNIG---------NLNGIG----GSTINP-- 226

  Fly   339 TSPVALTLSHSPQRQLPPPSHQAPPPPPRAATPPEDRRTSSIAALRLKAREH 390
                |::.|..|         ..||..|.:..  .|...||:|.||||:::|
Zfish   227 ----AMSSSTCP---------YGPPVSPYSVY--RDTCNSSLATLRLKSKQH 263

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alNP_722629.1 Homeodomain 86..142 CDD:459649 36/55 (65%)
OAR 374..391 CDD:461067 9/17 (53%)
pitx1NP_001035436.3 COG5576 8..>126 CDD:227863 53/118 (45%)
Homeodomain 59..115 CDD:459649 36/55 (65%)
OAR 247..263 CDD:461067 8/15 (53%)

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