DRSC/TRiP Functional Genomics Resources

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Protein Alignment al and Rhox4d

DIOPT Version :10

Sequence 1:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster
Sequence 2:NP_001034784.1 Gene:Rhox4d / 664610 MGIID:3613388 Length:205 Species:Mus musculus


Alignment Length:155 Identity:38/155 - (24%)
Similarity:60/155 - (38%) Gaps:36/155 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 RAPGSSAASAGAALTV------SMSVSGGAPSGASGASGGTNSPVSDGNSDCEADEYAPKR---- 83
            |..|.|......|..|      .:|..||..:|.:.....:|....|.:...:.:|..|:.    
Mouse    37 RNEGESVLGQSGAAAVEWDKAEELSGEGGPAAGDADLMDNSNQEDQDTSGSAQEEEKLPEEPVLR 101

  Fly    84 -------------------------KQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIG 123
                                     :||.....|..:||:|||:.|.:.|:.....|..||..||
Mouse   102 DAVVIDKVQPIPVLVSGVRPKSVWVQQRSLHYNFQWWQLQELERIFQQNHFIRAEERRHLARWIG 166

  Fly   124 LTEARIQVWFQNRRAKWRK-QEKVG 147
            ::|||:..||:.||..:|: |.::|
Mouse   167 VSEARVMRWFKKRREHFRRGQSQLG 191

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alNP_722629.1 Homeodomain 86..142 CDD:459649 21/55 (38%)
OAR 374..391 CDD:461067
Rhox4dNP_001034784.1 homeodomain 129..187 CDD:238039 22/57 (39%)
Blue background indicates that the domain is not in the aligned region.

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