DRSC/TRiP Functional Genomics Resources

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Protein Alignment al and Sebox

DIOPT Version :10

Sequence 1:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster
Sequence 2:NP_076441.1 Gene:Sebox / 58922 RGDID:62077 Length:188 Species:Rattus norvegicus


Alignment Length:199 Identity:67/199 - (33%)
Similarity:80/199 - (40%) Gaps:59/199 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 SPVSDGNSDCEADEYAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARI 129
            ||| :.:..| |....|   .||.||||:..||.|||:.|:...|||:.|||.||....|.||:|
  Rat     3 SPV-EASPGC-ASGLGP---HRRKRTTFSVGQLLELERVFAARPYPDISTREHLAQITHLPEAKI 62

  Fly   130 QVWFQNRRAKWRKQEKVGPQSHPYNPYLPGGAATMQTVVGAALPPN---PFTHLGFQLRKPFDAQ 191
            ||||||||||..|..|.|..:           |.::      ||||   |.|             
  Rat    63 QVWFQNRRAKRIKDRKPGALN-----------ARLE------LPPNCSLPDT------------- 97

  Fly   192 HAANLAAFRYPHLSAAPMIPS------GYFNQFQRAPPHMLPHGMAGMYSPSSSFQSLLANMTAV 250
                      |.||..|..||      ....|....||.  ...:|.:..|..|:....|   |.
  Rat    98 ----------PQLSWDPGTPSHPLHSTSSAQQTSACPPQ--TSCLAPILGPGQSWSGAKA---AA 147

  Fly   251 PRGT 254
            |.||
  Rat   148 PWGT 151

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alNP_722629.1 Homeodomain 86..142 CDD:459649 34/55 (62%)
OAR 374..391 CDD:461067
SeboxNP_076441.1 COG5576 <13..121 CDD:227863 52/150 (35%)
Homeodomain 19..72 CDD:459649 32/52 (62%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 80..125 15/84 (18%)
Blue background indicates that the domain is not in the aligned region.

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