DRSC/TRiP Functional Genomics Resources

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Protein Alignment al and Pitx2

DIOPT Version :10

Sequence 1:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster
Sequence 2:NP_001035970.1 Gene:Pitx2 / 54284 RGDID:3331 Length:324 Species:Rattus norvegicus


Alignment Length:409 Identity:107/409 - (26%)
Similarity:158/409 - (38%) Gaps:164/409 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 LVDRAPGSSAASAGA-------ALTVSMSVSGGAPSGASGAS--------GGTNSP-VSD----- 69
            |..||.|:..::|.:       ||.::..::.|.|.....:.        ..|:|| |::     
  Rat    10 LEHRAAGTKLSAASSPFCHHTQALAMASVLAPGQPRSLDASKHRLEVHTISDTSSPEVAEKDKGQ 74

  Fly    70 --GNSDCEADEYAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVW 132
              .|.|..|::.:.|::|||.||.|||.||:|||..|.|..|||:.||||:|:...|||||::||
  Rat    75 QGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVW 139

  Fly   133 FQNRRAKWRKQEK----------VGPQ----SHPYNPYLPGGAATMQTVVGAALPPNPFTHLGFQ 183
            |:||||||||:|:          .|||    ..||:...||.:.......|..            
  Rat   140 FKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLT------------ 192

  Fly   184 LRKPFDAQHAANLAAFRYPHLSAAPMIPSGYFNQFQRAPPHMLPHGMAGMYSPSSSFQSLLANMT 248
                     :|:|:...:|           :||..     ::.|.....|:||.:|..|:..:.:
  Rat   193 ---------SASLSTKSFP-----------FFNSM-----NVNPLSSQSMFSPPNSISSMSMSSS 232

  Fly   249 AVPRGTPLGKPPALLVGSP--DLHSPNHM--LASPPTSPASGHASQHQQHPTAHPPPPQAPPQMP 309
            .|         |:.:.|.|  .|:|.|::  |:||..:.|.         ||  |..|.|||   
  Rat   233 MV---------PSAVTGVPGSSLNSLNNLNNLSSPSLNSAV---------PT--PACPYAPP--- 274

  Fly   310 VGVQPAQLSPQHLVGIALTQQASSLSPTQTSPVALTLSHSPQRQLPPPSHQAPPPPPRAATPP-- 372
                                                                        |||  
  Rat   275 ------------------------------------------------------------TPPYV 279

  Fly   373 -EDRRTSSIAALRLKAREH 390
             .|...||:|:|||||::|
  Rat   280 YRDTCNSSLASLRLKAKQH 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alNP_722629.1 Homeodomain 86..142 CDD:459649 36/55 (65%)
OAR 374..391 CDD:461067 10/17 (59%)
Pitx2NP_001035970.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 57..111 21/53 (40%)
Homeodomain 93..149 CDD:459649 36/55 (65%)
OAR 282..299 CDD:461067 10/17 (59%)
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 286..299 9/13 (69%)
Nuclear localization signal. /evidence=ECO:0000255 292..296 3/3 (100%)

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