DRSC/TRiP Functional Genomics Resources

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Protein Alignment al and Ubx

DIOPT Version :10

Sequence 1:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster
Sequence 2:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster


Alignment Length:226 Identity:57/226 - (25%)
Similarity:81/226 - (35%) Gaps:78/226 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 GSSAASAGAALTVSMSVSGGAPSGASGAS-----------------------------------G 61
            |...|.||.|...:.::||.|...|:.:|                                   |
  Fly   202 GVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYG 266

  Fly    62 GTNSPVSDGNSDCEADEYAP-----KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMK 121
            |.::.:....|:..|....|     ...:||.|.|:|.:|..||||.|...||.....|.|:|..
  Fly   267 GISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHA 331

  Fly   122 IGLTEARIQVWFQNRRAKWRKQEKVGPQSHPYNPYLPGGAATMQTVVGAALPPNPFTHLGFQLRK 186
            :.|||.:|::||||||.|.:|:                    :|.:          ..|..| .|
  Fly   332 LCLTERQIKIWFQNRRMKLKKE--------------------IQAI----------KELNEQ-EK 365

  Fly   187 PFDAQHAANLAAFRYPHLSAAPMIPSGYFNQ 217
            ...||.||..||       ||..:..|:.:|
  Fly   366 QAQAQKAAAAAA-------AAAAVQGGHLDQ 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alNP_722629.1 Homeodomain 86..142 CDD:459649 27/55 (49%)
OAR 374..391 CDD:461067
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 27/55 (49%)
Blue background indicates that the domain is not in the aligned region.

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