DRSC/TRiP Functional Genomics Resources

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Protein Alignment al and ems

DIOPT Version :10

Sequence 1:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster
Sequence 2:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster


Alignment Length:251 Identity:67/251 - (26%)
Similarity:87/251 - (34%) Gaps:79/251 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 TVVGAALPPNPFTHLGFQLRKPF--DAQHAANLAAFRYPHLSAAPMIPSGYFNQFQRAPPHMLPH 228
            |...|.:.|.|...:||.:....  |...|...:.   |.||.....|.|..|            
  Fly    10 TAAAAVMMPTPKQKIGFSIESIVGNDVSTAGGNST---PDLSGPQSPPPGERN------------ 59

  Fly   229 GMAGMYSPSSSFQSLLANMTAVPRGTPLGKPPA---LLVGSPDLHSPNHMLASPPTSPASGHASQ 290
                                 || |:|...|||   |:.|||    |:|::|.|.......|...
  Fly    60 ---------------------VP-GSPPQTPPATLTLIPGSP----PHHLMAPPAHGLPYPHPHA 98

  Fly   291 HQQHPTA-HPPPPQAPPQMPVGVQPAQLSPQHLVGIALTQQ---------------ASSLSPTQT 339
            .|||..| ||.|..:|.|..|..|...:..|| .|...:.|               ||.|||.||
  Fly    99 QQQHLQAPHPHPHLSPAQQHVLHQHLLMQQQH-PGTPKSHQDIQELLQRLHHNAAMASGLSPLQT 162

  Fly   340 --SP--------VALTLSHSP----QRQLPPPSHQAPPP--PPRAATPPEDRRTSS 379
              ||        |:|....||    ..|...|:.:..||  ||::.:|...:.:||
  Fly   163 RLSPETEQPQMAVSLKRERSPAPPAMEQAENPAQRIQPPHTPPKSVSPQSSQPSSS 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alNP_722629.1 Homeodomain 86..142 CDD:459649
OAR 374..391 CDD:461067 2/6 (33%)
emsNP_731868.1 Homeodomain 389..445 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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