DRSC/TRiP Functional Genomics Resources

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Protein Alignment al and Dfd

DIOPT Version :10

Sequence 1:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster
Sequence 2:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster


Alignment Length:264 Identity:65/264 - (24%)
Similarity:94/264 - (35%) Gaps:91/264 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 GTNSPVSD-GNSDCEAD---------------------------EYAPKRKQRRYRTTFTSFQLE 98
            |:|....| |:||.:.|                           .|.|..:.:|.||.:|..|:.
  Fly   315 GSNDNDDDLGDSDSDEDLMAETTDGERIIYPWMKKIHVAGVANGSYQPGMEPKRQRTAYTRHQIL 379

  Fly    99 ELEKAFSRTHYPDVFTRE---ELAMKIGLTEARIQVWFQNRRAKWRKQEKVGPQSHPYNPYLPGG 160
            ||||.|   ||....||.   |:|..:.|:|.:|::||||||.||:|..|           ||..
  Fly   380 ELEKEF---HYNRYLTRRRRIEIAHTLVLSERQIKIWFQNRRMKWKKDNK-----------LPNT 430

  Fly   161 AATMQTVVGAALPPNPFTHLGFQLRKPFDAQHAANLAAFRYPHLSAAPMIPSGYFNQFQRAPPHM 225
            ....:..|.|...|.|..      :||  .:.||:      .....|.........|.|:.|   
  Fly   431 KNVRKKTVDANGNPTPVA------KKP--TKRAAS------KKQQQAQQQQQSQQQQTQQTP--- 478

  Fly   226 LPHGMAGMYSPSSSFQSLLANMTAVPRG---TPLGKPPALLVGSPDLHSPNHMLASPPTSPASGH 287
                :......|.|.:|:         |   :.||.||             ::.|:|.|:.:...
  Fly   479 ----VMNECIRSDSLESI---------GDVSSSLGNPP-------------YIPAAPETTSSYPG 517

  Fly   288 ASQH 291
            :.||
  Fly   518 SQQH 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alNP_722629.1 Homeodomain 86..142 CDD:459649 27/58 (47%)
OAR 374..391 CDD:461067
DfdNP_477201.1 Homeodomain 367..423 CDD:459649 27/58 (47%)
Blue background indicates that the domain is not in the aligned region.

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