DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment al and Gsc2

DIOPT Version :10

Sequence 1:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster
Sequence 2:NP_001102316.1 Gene:Gsc2 / 363831 RGDID:1305333 Length:214 Species:Rattus norvegicus


Alignment Length:165 Identity:57/165 - (34%)
Similarity:75/165 - (45%) Gaps:32/165 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LEELPQEAKLAHPDAVV--------LVDRAPGSSAASAGAALTVSMSVSGGAPSGASG------- 58
            |..||:...:|.|...|        ....||..:|..|........:...|.|..|||       
  Rat    38 LSSLPERRPVARPPQPVGGRNPAEPDEPEAPAPAAPCACCCCCNPRAAPRGTPETASGPGLRLGW 102

  Fly    59 ------------ASGGTNSPVSDGNSDCEADEYAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPD 111
                        .:..|.||...|.|.     ..|:|:.||:||.|:..||:.||..|.:..|||
  Rat   103 PLRLAPESPSPLTAPSTGSPALTGTSG-----PGPQRRTRRHRTIFSEEQLQALEALFVQNQYPD 162

  Fly   112 VFTREELAMKIGLTEARIQVWFQNRRAKWRKQEKV 146
            |.|||.||::|.|.|.|::|||:|||||||.|::|
  Rat   163 VGTRERLAVRIRLREERVEVWFKNRRAKWRHQKRV 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alNP_722629.1 Homeodomain 86..142 CDD:459649 32/55 (58%)
OAR 374..391 CDD:461067
Gsc2NP_001102316.1 Homeodomain 137..193 CDD:459649 32/55 (58%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.