DRSC/TRiP Functional Genomics Resources

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Protein Alignment al and vsx1

DIOPT Version :10

Sequence 1:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster
Sequence 2:NP_571408.1 Gene:vsx1 / 30598 ZFINID:ZDB-GENE-990415-205 Length:344 Species:Danio rerio


Alignment Length:295 Identity:85/295 - (28%)
Similarity:113/295 - (38%) Gaps:97/295 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 SGGTNSPVSDGNSDCEADEYAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGL 124
            ||..|...:.|||.        |||:||:||.|||.|||||||||:..|||||:.||.||||..|
Zfish   134 SGDRNDGKNSGNSQ--------KRKKRRHRTVFTSHQLEELEKAFNEAHYPDVYAREMLAMKTEL 190

  Fly   125 TEARIQVWFQNRRAKWRKQEKVGPQSHPYNPYLPGGAATMQTVVGAALPPNPFTHLGFQLRKPFD 189
            .|.|||||||||||||||:||...:|.....|...||     :|..::|                
Zfish   191 PEDRIQVWFQNRRAKWRKREKCWGRSSVMAEYGLYGA-----MVRHSIP---------------- 234

  Fly   190 AQHAANLAAFRYPHLSAAPMIPSGYFNQFQRAPPHMLPHGMAGMYSPSSSFQSLLANMTAVPRGT 254
                                :|....|..:        .||.|..:|                  
Zfish   235 --------------------LPESIINSAK--------SGMMGSCAP------------------ 253

  Fly   255 PLGKPPALLVGSP-DLHSPN-HMLASPPTSPASGHASQHQQHPTAHPPPPQAPPQMPVGVQPAQL 317
                   .|:|.| .:|..: .::...|.:|.|.|:..:.:....    ..:......|...|..
Zfish   254 -------WLLGEPAGMHKKSMEIVKKAPGTPESTHSDTYSEEHKG----KDSDTTWSSGANGADD 307

  Fly   318 SPQHLVGIALTQQASSLSPTQTSPVALTLSHSPQR 352
            |....:.::.|.:..:.|         ||..||.|
Zfish   308 SEDMAIDLSSTSKQENKS---------TLKRSPPR 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alNP_722629.1 Homeodomain 86..142 CDD:459649 42/55 (76%)
OAR 374..391 CDD:461067
vsx1NP_571408.1 Octapeptide motif 37..44
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 49..70
COG5576 101..>221 CDD:227863 56/94 (60%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 127..156 11/29 (38%)
Nuclear localization signal. /evidence=ECO:0000269|PubMed:11331779 147..151 2/11 (18%)
Homeodomain 152..208 CDD:459649 42/55 (76%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 273..344 14/74 (19%)
Blue background indicates that the domain is not in the aligned region.

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