DRSC/TRiP Functional Genomics Resources

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Protein Alignment al and otx2b

DIOPT Version :10

Sequence 1:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster
Sequence 2:NP_571326.1 Gene:otx2b / 30501 ZFINID:ZDB-GENE-980526-406 Length:289 Species:Danio rerio


Alignment Length:295 Identity:89/295 - (30%)
Similarity:122/295 - (41%) Gaps:95/295 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 APKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 144
            |..|||||.|||||..||:.||..|::|.|||:|.|||:|:||.|.|:|:||||:|||||.|:| 
Zfish    33 ATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ- 96

  Fly   145 KVGPQSHPYNPYLPGGAATMQTVVGAALPPNPFTHLGFQLRKPFDAQHAANLAAFRYPHLSAAPM 209
                |....|    ||    |..|..|            .:|...|:.|::              
Zfish    97 ----QQQQQN----GG----QNKVRPA------------KKKSSPAREASS-------------- 123

  Fly   210 IPSGYFNQFQRAPPHMLPHGMAGMYSPSSSFQSLLANMTAVPRGTPLGKPPALLVGSPDLHSPNH 274
                             ..|.:|.::|.||        |:||..:....|  :.:.||...||  
Zfish   124 -----------------ESGASGQFTPPSS--------TSVPAISTTTAP--VSIWSPASISP-- 159

  Fly   275 MLASPPTSPASGHASQHQQHPTAHPPPPQAPPQ-------------MPVGVQPAQLSPQHLVGIA 326
              .|.|.|.:|  :...:.:|..:   .||...             |..|   :.|:|.|   ..
Zfish   160 --LSDPLSTSS--SCMQRSYPMTY---TQASGYSQGYAGSTSYFGGMDCG---SYLTPMH---HQ 211

  Fly   327 LTQQASSLSPTQTSPVALTLSHSPQRQLPPPSHQA 361
            ||...|:|||..::.|...|:.|| ..||...:.|
Zfish   212 LTGPGSTLSPMSSNAVTSHLNQSP-ASLPTQGYGA 245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alNP_722629.1 Homeodomain 86..142 CDD:459649 35/55 (64%)
OAR 374..391 CDD:461067
otx2bNP_571326.1 Homeodomain 39..94 CDD:459649 35/54 (65%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 93..142 20/112 (18%)
TF_Otx 153..234 CDD:427350 24/95 (25%)
Blue background indicates that the domain is not in the aligned region.

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