DRSC/TRiP Functional Genomics Resources

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Protein Alignment al and Shox2

DIOPT Version :10

Sequence 1:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster
Sequence 2:NP_037160.2 Gene:Shox2 / 25546 RGDID:3674 Length:331 Species:Rattus norvegicus


Alignment Length:397 Identity:110/397 - (27%)
Similarity:134/397 - (33%) Gaps:150/397 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 RAPGSSAASAGAALTVSMSVSGGAPSGASGASGGTNSPV-------------------------- 67
            ||.|....:.|..........|....||.|.:||..|||                          
  Rat    56 RAAGGGGGAGGGGGGGGGGGGGAGGGGAGGGAGGGRSPVRELDMGAAERSREPGSPRLTEVSPEL 120

  Fly    68 SDGNSDCEA--DEYAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQ 130
            .|...|.:.  ||...|.||||.||.||..||.|||:.|..|||||.|.||||:.::||:|||:|
  Rat   121 KDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ 185

  Fly   131 VWFQNRRAKWRKQEKVGPQSHPYNPYLPGGAATMQTVVGAALPPNPFTHLGFQLRKPFDAQHAAN 195
            |||||||||.||||.   |.|  ...|.|.|:..:     |....|:.::| .||.||...    
  Rat   186 VWFQNRRAKCRKQEN---QLH--KGVLIGAASQFE-----ACRVAPYVNVG-ALRMPFQQD---- 235

  Fly   196 LAAFRYPHLSAAPMIPSGYFNQFQRAPPHMLPHGMAGMYSPSSSFQSLLANMTAVPRGTPLGKPP 260
                  .|.:..|:                             |||                   
  Rat   236 ------SHCNVTPL-----------------------------SFQ------------------- 246

  Fly   261 ALLVGSPDLHSPNHMLASPPTSPASGHASQH-QQHPTAHPPPPQAPPQMPVGVQPAQLSPQHLVG 324
                          :.|......|..||..| ..|..||.|....|.. |.|:..|.|:      
  Rat   247 --------------VQAQLQLDSAVAHAHHHLHPHLAAHAPYMMFPAP-PFGLPLATLA------ 290

  Fly   325 IALTQQASSLSPTQTSPVALTLSHSPQRQLPPPSHQAPPPPPRAATPPEDRRTSSIAALRLKARE 389
               ...||:.|....:..|.|.|                            :.||||.|||||::
  Rat   291 ---ADSASAASVVAAAAAAKTTS----------------------------KNSSIADLRLKAKK 324

  Fly   390 HELKLEL 396
            |...|.|
  Rat   325 HAAALGL 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alNP_722629.1 Homeodomain 86..142 CDD:459649 37/55 (67%)
OAR 374..391 CDD:461067 9/16 (56%)
Shox2NP_037160.2 Homeodomain 141..197 CDD:459649 37/55 (67%)
OAR 311..327 CDD:461067 10/15 (67%)

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