DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment al and Rhox11

DIOPT Version :10

Sequence 1:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster
Sequence 2:NP_941000.1 Gene:Rhox11 / 194738 MGIID:2681831 Length:206 Species:Mus musculus


Alignment Length:152 Identity:47/152 - (30%)
Similarity:68/152 - (44%) Gaps:32/152 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 EEIKLEELPQEAKLAHPDAVVLVDRAPGSSAASAGAALTVSMSVSGGAPSGASGASGGTNSPVSD 69
            |||..|  |:| |:|:             ::.|.|.|..|:     |.|.....:|.|.:|.|..
Mouse    20 EEITTE--PEE-KVAY-------------TSNSGGFADEVT-----GIPKEGHQSSIGEHSCVMP 63

  Fly    70 GNSDC------EADEYAPKRKQRRYRT-----TFTSFQLEELEKAFSRTHYPDVFTREELAMKIG 123
            ...|.      |..:.|...:|..:|.     .||..||.||:..|....|||...|:|||..:.
Mouse    64 NTQDTGREEPEETSKVAETSEQSLFRIPRKAYRFTPGQLWELQAVFVENQYPDALKRKELAGLLN 128

  Fly   124 LTEARIQVWFQNRRAKWRKQEK 145
            :.|.:|:.||.|:|||:||.::
Mouse   129 VDEQKIKDWFNNKRAKYRKIQR 150

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alNP_722629.1 Homeodomain 86..142 CDD:459649 23/60 (38%)
OAR 374..391 CDD:461067
Rhox11NP_941000.1 Homeodomain 96..147 CDD:459649 22/50 (44%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.