DRSC/TRiP Functional Genomics Resources

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Protein Alignment al and unc-42

DIOPT Version :10

Sequence 1:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster
Sequence 2:NP_001263845.1 Gene:unc-42 / 192081 WormBaseID:WBGene00006778 Length:279 Species:Caenorhabditis elegans


Alignment Length:288 Identity:92/288 - (31%)
Similarity:128/288 - (44%) Gaps:52/288 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 HPDAVVLVDRA--PGSSAASAGAALTVSMSVSGGAPSGASGASGGTNSPVSDGNSDCEADEYAPK 82
            :|.::..|..:  |.|..:|.||...:.....||:..|:| .:|.||:|..  ....|..|....
 Worm    36 YPSSLDTVSASLRPISDPSSDGAFKKIKTEGLGGSVFGSS-IAGVTNTPAR--LCSLERPESERL 97

  Fly    83 RKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK-V 146
            ..:||:|||||..||:||:.||.::||||::.|||||....|.||||||||||||||.||.|| :
 Worm    98 NSRRRHRTTFTQEQLQELDAAFQKSHYPDIYVREELARITKLNEARIQVWFQNRRAKHRKHEKQL 162

  Fly   147 GPQSHPYNPYLPGGAATM--QTVVGAALPPNPFTHLGFQLRKPFDAQHAANLAAFRYPHLSAAPM 209
            ....:|.:.:|...|.|:  |.:..|||..:.|.:..:|...|             ||  :|:| 
 Worm   163 NKAINPPHSFLSNPANTLMRQGMYPAALNRDGFWYQSYQRPMP-------------YP--TASP- 211

  Fly   210 IPSGYFNQFQRAPPHMLPHGMAGMYSPSSSFQ-SLLANMTAVPRGTPLGKPPALLVGSPDLHSPN 273
               .|.|.|.. |.....|.:....:....:| ||...||..|..                    
 Worm   212 ---SYSNSFTN-PIANFGHSITSFQADDEFYQKSLALRMTTTPSA-------------------- 252

  Fly   274 HMLASPPTSPASGHASQHQQHPTAHPPP 301
               |:..||.|:.:..|.|....:..||
 Worm   253 ---ATAATSLANINYQQTQPSEASTNPP 277

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alNP_722629.1 Homeodomain 86..142 CDD:459649 37/55 (67%)
OAR 374..391 CDD:461067
unc-42NP_001263845.1 Homeodomain 101..157 CDD:459649 37/55 (67%)
Blue background indicates that the domain is not in the aligned region.

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