DRSC/TRiP Functional Genomics Resources

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Protein Alignment al and Pax1

DIOPT Version :9

Sequence 1:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster
Sequence 2:XP_006498974.1 Gene:Pax1 / 18503 MGIID:97485 Length:534 Species:Mus musculus


Alignment Length:424 Identity:91/424 - (21%)
Similarity:133/424 - (31%) Gaps:137/424 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 PGSSAASAGAALTVSM----SVSGGAPSGASGASGGTNSPVSDGNSDCEADEYAPKRKQRRYRTT 91
            ||:..|....:|.||.    .::...|...||..|....|      ||...  :|:|...|    
Mouse   114 PGAGGALGSGSLRVSSRRGPRLARALPLCLSGGGGARALP------DCAGP--SPRRSGAR---- 166

  Fly    92 FTSFQL---EELEKAFSRTH-YPDVFTR------------EELAMKIGLTEARIQVWFQNRRAKW 140
                ||   ..:|:.:...: ...||..            .||| ::|:....|.   :..|...
Mouse   167 ----QLAGPRAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELA-QLGIRPCDIS---RQLRVSH 223

  Fly   141 RKQEKVGPQSHPYNPYLPGGAATMQTVVGAALP----PNPFTHL-----------GFQLRKPFDA 190
            ....|:..:.:.....|||       .:|.:.|    ||...|:           .:::|....|
Mouse   224 GCVSKILARYNETGSILPG-------AIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLA 281

  Fly   191 QHAANLAAFRYPHLSAAPMI----------PSGYFNQFQRAPPHMLPHGMAGMY---SPSSSFQS 242
            ....:  .:..|.:|:...|          |..|....|..|...||:.....|   ||.|    
Mouse   282 DGVCD--KYNVPSVSSISRILRNKIGSLAQPGPYEASKQPPPQPALPYNHIYQYPYPSPVS---- 340

  Fly   243 LLANMTAVPRGTPLGKPPALLVGS----------PDLHSPNHMLASPPTSPASGHASQHQQHPTA 297
                    |.||.:|..|. :.||          |..||.:::|........:|..:..:  ..|
Mouse   341 --------PTGTKMGTHPG-VPGSAGHVSIPRSWPSAHSVSNILGIRTFMEQTGALAGSE--GAA 394

  Fly   298 HPPPPQ--------APPQMPV--GVQPAQLSPQHLVGIALTQQASSLSP---------------- 336
            :.|..:        |.|..|.  |::...|.    ..|..||.|||||.                
Mouse   395 YSPKMEDWAGVNRAAFPTSPAVNGLEKPALE----ADIKYTQSASSLSAVGGFLPACAYPASNQH 455

  Fly   337 -TQTSPVALTLSHSPQRQLPPPSHQAPPPPPRAA 369
             ..::|.|..||..|    |.|..||||..|..|
Mouse   456 GVYSAPAAGYLSPGP----PWPPAQAPPLTPHGA 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alNP_722629.1 Homeobox 89..141 CDD:278475 11/67 (16%)
OAR 374..391 CDD:281777
Pax1XP_006498974.1 PAX 177..304 CDD:238076 22/139 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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