DRSC/TRiP Functional Genomics Resources

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Protein Alignment al and ceh-53

DIOPT Version :10

Sequence 1:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster
Sequence 2:NP_500361.3 Gene:ceh-53 / 182467 WormBaseID:WBGene00015651 Length:203 Species:Caenorhabditis elegans


Alignment Length:246 Identity:65/246 - (26%)
Similarity:95/246 - (38%) Gaps:91/246 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 TNSPVSDGNSDCEADEYAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEA 127
            ::.|.|..||:        :|:.||.||.|:..|||.||:||.:..||||..||.|..:..|.||
 Worm    17 SSPPQSAQNSE--------ERRVRRLRTAFSENQLELLEEAFLKCQYPDVQQRETLGKQTELAEA 73

  Fly   128 RIQVWFQNRRAKWRKQEK-----------VGPQSHPYNPYLPGGAATMQTVV----GAALPPNPF 177
            ||||||:|||||.||:::           ...:....:..|...|....|::    ||||     
 Worm    74 RIQVWFKNRRAKARKRQRNESTDSCSTTEESNEEGDADGCLKKKAKNETTIITWTPGAAL----- 133

  Fly   178 THLGFQLRKPFDAQHAANLAAFRYPHLSAAPMIPSGYFNQFQRAPP-----HMLPHGMAGMYSPS 237
                      |::..:        |..::.|..|         |||     |..|.   ..|:|.
 Worm   134 ----------FNSSLS--------PTTTSIPTTP---------APPLNFICHQNPF---YAYNPY 168

  Fly   238 SSFQSLLANMTAVPRGTPLGKPPALLVGSPDLHSPNHMLASPPTSPASGHA 288
            .:..::                            |.|:||:..|:.:.|.|
 Worm   169 RNLNTI----------------------------PTHLLAATTTAASIGSA 191

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alNP_722629.1 Homeodomain 86..142 CDD:459649 33/55 (60%)
OAR 374..391 CDD:461067
ceh-53NP_500361.3 Homeodomain 32..81 CDD:459649 28/48 (58%)
Blue background indicates that the domain is not in the aligned region.

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